Regulog Zur - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 42 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021	5	3
Rhizobium sp. NGR234	4	2
Rhizobium leguminosarum bv. viciae 3841	10	5
Rhizobium etli CFN 42	11	6
Agrobacterium tumefaciens str. C58 (Cereon)	10	6
Mesorhizobium sp. BNC1	4	2
Mesorhizobium loti MAFF303099	3	1
Brucella melitensis 16M	5	2
Bartonella quintana str. Toulouse	3	1
Rhodopseudomonas palustris CGA009	8	3
Bradyrhizobium japonicum USDA 110	7	2
Bradyrhizobium sp. BTAi1	9	4
Nitrobacter winogradskyi Nb-255	7	2
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
PF11162	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -44 score = 5.2023 sequence = GCAATGTTACTTTATAACATCGG Gene: RPA4384: Conserved hypothetical protein	* Bradyrhizobium japonicum USDA 110 Site: position = -3 score = 5.32466 sequence = GCGATGTTACATTATAACATCGC Gene: bll2461: Conserved hypothetical protein	* Bradyrhizobium sp. BTAi1 Site: position = -75 score = 4.57107 sequence = GCGATGTTACTTTGTAACAATGG Gene: BBta_2267: Conserved hypothetical protein	* Nitrobacter winogradskyi Nb-255 Site: position = -65 score = 5.26124 sequence = CAGGCGTTATATTATAACATCCG Gene: Nwi_2630: Conserved hypothetical protein	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Conserved hypothetical protein
omr	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA4385: Predicted zinc-regulated TonB-dependent outer membrane transporter	Bradyrhizobium japonicum USDA 110 Gene: bll2460: Predicted zinc-regulated TonB-dependent outer membrane transporter	Bradyrhizobium sp. BTAi1 Gene: BBta_2266: Predicted zinc-regulated TonB-dependent outer membrane transporter	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2631: Predicted zinc-regulated TonB-dependent outer membrane transporter	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted zinc-regulated TonB-dependent outer membrane transporter

CRON 2.
zinT	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium etli CFN 42 Site: position = -74 score = 5.35849 sequence = GTAATGTTATTACATTACGGACT Gene: RHE_PF00158: Candidate zinc-binding lipoprotein ZinT	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -58 score = 6.11983 sequence = GAAATGTAATGTTATTACGTTAC Gene: Atu1049: Candidate zinc-binding lipoprotein ZinT	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Candidate zinc-binding lipoprotein ZinT

CRON 3.
znuA2	* Sinorhizobium meliloti 1021 Site: position = -86 score = 5.50665 sequence = TTGATGTAATAACATAACAACGC Gene: SMc04245: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Rhizobium sp. NGR234 Site: position = -204 score = 5.40185 sequence = TTGATGTAATAACATTACGTGCA Gene: NGR_c17650: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -89 score = 5.65781 sequence = TTGATGTAATAACATAACAATTG Gene: RL3178: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Rhizobium etli CFN 42 Site: position = -43 score = 5.46844 sequence = TCAATGTAATAACATAACACTCG Gene: RHE_CH02712: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -45 score = 5.63137 sequence = TAAATGTAATAACATAACTATAC Gene: Atu1521: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Mesorhizobium sp. BNC1 Site: position = -105 score = 5.62429 sequence = CAAGTGTAATGTCATAACGTTTA Gene: Meso_4006: Zinc ABC transporter, periplasmic-binding protein ZnuA	Mesorhizobium loti MAFF303099	* Brucella melitensis 16M Site: position = -106 score = 5.26909 sequence = CAGACGTTATAGCATAACGTAAT Gene: BMEII0178: Zinc ABC transporter, periplasmic-binding protein ZnuA	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Zinc ABC transporter, periplasmic-binding protein ZnuA
yciC2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -44 score = 6.20834 sequence = CAAATGTAATGATATAACATAAA Gene: RL3179: Putative Putative zinc chaperone, COG0523 family	* Rhizobium etli CFN 42 Site: position = -39 score = 6.00065 sequence = GACATGTAATGATATAACATTAA Gene: RHE_CH02713: Putative Putative zinc chaperone, COG0523 family	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -120 score = 5.90585 sequence = CATATGTAATGTTATTACGTTAC Site: position = -262 score = 5.88427 sequence = GATATGTAATGTTATTACATTCG Gene: Atu3181: Putative Putative zinc chaperone, COG0523 family	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEII0179: Putative Putative zinc chaperone, COG0523 family	Bartonella quintana str. Toulouse	* Rhodopseudomonas palustris CGA009 Site: position = -65 score = 5.82893 sequence = TTTATGTAATGTTATAACGTTTC Gene: RPA1462: Putative Putative zinc chaperone, COG0523 family	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Putative Putative zinc chaperone, COG0523 family

CRON 4.
znuC2	* Sinorhizobium meliloti 1021 Site: position = -114 score = 5.55909 sequence = GCGTTGTTATGTTATTACATCAA Gene: SMc04244: Zinc ABC transporter, ATP-binding protein ZnuC	* Rhizobium sp. NGR234 Site: position = -8 score = 5.26846 sequence = TGCACGTAATGTTATTACATCAA Gene: NGR_c17640: Zinc ABC transporter, ATP-binding protein ZnuC	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -81 score = 5.83064 sequence = CAATTGTTATGTTATTACATCAA Gene: RL3177: Zinc ABC transporter, ATP-binding protein ZnuC	* Rhizobium etli CFN 42 Site: position = -81 score = 5.43159 sequence = CGAGTGTTATGTTATTACATTGA Gene: RHE_CH02711: Zinc ABC transporter, ATP-binding protein ZnuC	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -82 score = 5.48887 sequence = GTATAGTTATGTTATTACATTTA Gene: Atu1520: Zinc ABC transporter, ATP-binding protein ZnuC	* Mesorhizobium sp. BNC1 Site: position = -77 score = 5.46297 sequence = TAAACGTTATGACATTACACTTG Gene: Meso_4005: Zinc ABC transporter, ATP-binding protein ZnuC	Mesorhizobium loti MAFF303099	* Brucella melitensis 16M Site: position = -183 score = 5.39146 sequence = GATATGTTATTTTATTACGCAAA Gene: BMEII0177: Zinc ABC transporter, ATP-binding protein ZnuC	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Zinc ABC transporter, ATP-binding protein ZnuC
znuB2	Sinorhizobium meliloti 1021 Gene: SMc04243: Zinc ABC transporter, inner membrane permease protein ZnuB	Rhizobium sp. NGR234 Gene: NGR_c17630: Zinc ABC transporter, inner membrane permease protein ZnuB	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3176: Zinc ABC transporter, inner membrane permease protein ZnuB	Rhizobium etli CFN 42 Gene: RHE_CH02710: Zinc ABC transporter, inner membrane permease protein ZnuB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1519: Zinc ABC transporter, inner membrane permease protein ZnuB	Mesorhizobium sp. BNC1 Gene: Meso_4004: Zinc ABC transporter, inner membrane permease protein ZnuB	Mesorhizobium loti MAFF303099	Brucella melitensis 16M Gene: BMEII0176: Zinc ABC transporter, inner membrane permease protein ZnuB	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Zinc ABC transporter, inner membrane permease protein ZnuB
zur	Sinorhizobium meliloti 1021 Gene: SMc04242: Zinc uptake regulation protein Zur	Rhizobium sp. NGR234 Gene: NGR_c17620: Zinc uptake regulation protein Zur	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3175: Zinc uptake regulation protein Zur	Rhizobium etli CFN 42 Gene: RHE_CH02709: Zinc uptake regulation protein Zur	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1518: Zinc uptake regulation protein Zur	Mesorhizobium sp. BNC1 Gene: Meso_4003: Zinc uptake regulation protein Zur	Mesorhizobium loti MAFF303099 Gene: mll3299: Zinc uptake regulation protein Zur	Brucella melitensis 16M Gene: BMEII0175: Zinc uptake regulation protein Zur	Bartonella quintana str. Toulouse Gene: BQ10010: Zinc uptake regulation protein Zur	Rhodopseudomonas palustris CGA009 Gene: RPA0517: Zinc uptake regulation protein Zur	Bradyrhizobium japonicum USDA 110 Gene: blr0934: Zinc uptake regulation protein Zur	Bradyrhizobium sp. BTAi1 Gene: BBta_7635: Zinc uptake regulation protein Zur	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0493: Zinc uptake regulation protein Zur	Azorhizobium caulinodans ORS 571 Gene: AZC_4579: Zinc uptake regulation protein Zur	Xanthobacter autotrophicus Py2 Gene: Xaut_1888: Zinc uptake regulation protein Zur	Zinc uptake regulation protein Zur

CRON 5.
znuC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -158 score = 5.37613 sequence = TAACCGTAATGTTATTACATTGT Gene: RL1047: Zinc ABC transporter, ATP-binding protein ZnuC	* Rhizobium etli CFN 42 Site: position = -174 score = 5.42632 sequence = TAATCGTTATAACATAACAGTAA Gene: RHE_CH00969: Zinc ABC transporter, ATP-binding protein ZnuC	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -203 score = 5.84892 sequence = GTAACGTAATAACATTACATATG Site: position = -91 score = 5.86667 sequence = TTAATGTTATTTCATTACATATT Site: position = -61 score = 5.8066 sequence = CGAATGTAATAACATTACATATC Gene: Atu3180: Zinc ABC transporter, ATP-binding protein ZnuC	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -69 score = 5.7527 sequence = CTAATGTAATAACATCACATATC Gene: mll8315: Zinc ABC transporter, ATP-binding protein ZnuC	Brucella melitensis 16M	* Bartonella quintana str. Toulouse Site: position = -56 score = 6.24658 sequence = CAAATGTTATATTATTACATAAC Gene: BQ01790: Zinc ABC transporter, ATP-binding protein ZnuC	* Rhodopseudomonas palustris CGA009 Site: position = -248 score = 5.07069 sequence = ATAATGTTATAATGTAACAGGTT Gene: RPA0858: Zinc ABC transporter, ATP-binding protein ZnuC	* Bradyrhizobium japonicum USDA 110 Site: position = -259 score = 5.85877 sequence = GTAATGTTATAATATAACGTCCA Gene: bll7771: Zinc ABC transporter, ATP-binding protein ZnuC	* Bradyrhizobium sp. BTAi1 Site: position = -271 score = 5.64587 sequence = ATGATGTTATAATGTAACATTAT Gene: BBta_1339: Zinc ABC transporter, ATP-binding protein ZnuC	* Nitrobacter winogradskyi Nb-255 Site: position = -252 score = 5.47562 sequence = GTGATGTTATAATATAACGGTCG Gene: Nwi_0914: Zinc ABC transporter, ATP-binding protein ZnuC	Azorhizobium caulinodans ORS 571 Gene: AZC_0562: Zinc ABC transporter, ATP-binding protein ZnuC	Xanthobacter autotrophicus Py2 Gene: Xaut_4707: Zinc ABC transporter, ATP-binding protein ZnuC	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1048: Zinc ABC transporter, inner membrane permease protein ZnuB	Rhizobium etli CFN 42 Gene: RHE_CH00970: Zinc ABC transporter, inner membrane permease protein ZnuB	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3179: Zinc ABC transporter, inner membrane permease protein ZnuB	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll8314: Zinc ABC transporter, inner membrane permease protein ZnuB	Brucella melitensis 16M	Bartonella quintana str. Toulouse Gene: BQ01780: Zinc ABC transporter, inner membrane permease protein ZnuB	Rhodopseudomonas palustris CGA009 Gene: RPA0859: Zinc ABC transporter, inner membrane permease protein ZnuB	Bradyrhizobium japonicum USDA 110 Gene: bll7770: Zinc ABC transporter, inner membrane permease protein ZnuB	Bradyrhizobium sp. BTAi1 Gene: BBta_1340: Zinc ABC transporter, inner membrane permease protein ZnuB	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0915: Zinc ABC transporter, inner membrane permease protein ZnuB	Azorhizobium caulinodans ORS 571 Gene: AZC_0563: Zinc ABC transporter, inner membrane permease protein ZnuB	Xanthobacter autotrophicus Py2 Gene: Xaut_4708: Zinc ABC transporter, inner membrane permease protein ZnuB	Zinc ABC transporter, inner membrane permease protein ZnuB
znuA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL1049: Zinc ABC transporter, periplasmic-binding protein ZnuA	Rhizobium etli CFN 42 Gene: RHE_CH00971: Zinc ABC transporter, periplasmic-binding protein ZnuA	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3178: Zinc ABC transporter, periplasmic-binding protein ZnuA	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll8313: Zinc ABC transporter, periplasmic-binding protein ZnuA	Brucella melitensis 16M	Bartonella quintana str. Toulouse Gene: BQ01770: Zinc ABC transporter, periplasmic-binding protein ZnuA	Rhodopseudomonas palustris CGA009 Gene: RPA0860: Zinc ABC transporter, periplasmic-binding protein ZnuA	Bradyrhizobium japonicum USDA 110 Gene: bll7769: Zinc ABC transporter, periplasmic-binding protein ZnuA	Bradyrhizobium sp. BTAi1 Gene: BBta_1341: Zinc ABC transporter, periplasmic-binding protein ZnuA	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0916: Zinc ABC transporter, periplasmic-binding protein ZnuA	Azorhizobium caulinodans ORS 571 Gene: AZC_0564: Zinc ABC transporter, periplasmic-binding protein ZnuA	Xanthobacter autotrophicus Py2 Gene: Xaut_4709: Zinc ABC transporter, periplasmic-binding protein ZnuA	Zinc ABC transporter, periplasmic-binding protein ZnuA
yciC	2 Sinorhizobium meliloti 1021* Site: position = -101 score = 5.27392 sequence = GCTATGTTACGTTATTACGTTTA Gene: SMc03799: Putative zinc chaperone, COG0523 family Gene: SMc02978: Putative zinc chaperone, COG0523 family	Rhizobium sp. NGR234	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -124 score = 5.311 sequence = GCGATGTGATCTTATAACATTAT Gene: RL4148: Putative zinc chaperone, COG0523 family	* Rhizobium etli CFN 42 Site: position = -122 score = 5.34773 sequence = GCAATGTGATCTTATAACATATA Gene: RHE_CH03625: Putative zinc chaperone, COG0523 family	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -142 score = 5.41587 sequence = ATAACGTTATTTCATAACAAAAT Gene: Atu4502: Putative zinc chaperone, COG0523 family	Mesorhizobium sp. BNC1 Gene: Meso_2842: Putative zinc chaperone, COG0523 family	Mesorhizobium loti MAFF303099 Gene: mll5156: Putative zinc chaperone, COG0523 family	Brucella melitensis 16M Gene: BMEII0308: Putative zinc chaperone, COG0523 family	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA0861: Putative zinc chaperone, COG0523 family	Bradyrhizobium japonicum USDA 110 Gene: bll7768: Putative zinc chaperone, COG0523 family	3 Bradyrhizobium sp. BTAi1* Gene: BBta_1342: Putative zinc chaperone, COG0523 family Site: position = -260 score = 5.60061 sequence = ATTTTGTAATGTTATAACATCAC Gene: BBta_2276: Putative zinc chaperone, COG0523 family Site: position = -87 score = 6.00664 sequence = ATGATGTTATGTTATAACATAAC Gene: BBta_2203: Putative zinc chaperone, COG0523 family	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0917: Putative zinc chaperone, COG0523 family	2 Azorhizobium caulinodans ORS 571 Gene: AZC_0565: Putative zinc chaperone, COG0523 family Gene: AZC_1103: Putative zinc chaperone, COG0523 family	Xanthobacter autotrophicus Py2 Gene: Xaut_4710: Putative zinc chaperone, COG0523 family	Putative zinc chaperone, COG0523 family
PF00400	Sinorhizobium meliloti 1021 Gene: SMc02979: Conserved hypothetical protein	Rhizobium sp. NGR234 Gene: NGR_c29220: Conserved hypothetical protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4149: Conserved hypothetical protein	Rhizobium etli CFN 42 Gene: RHE_CH03626: Conserved hypothetical protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4501: Conserved hypothetical protein	Mesorhizobium sp. BNC1 Gene: Meso_2841: Conserved hypothetical protein	Mesorhizobium loti MAFF303099 Gene: mll5154: Conserved hypothetical protein	Brucella melitensis 16M Gene: BMEII0307: Conserved hypothetical protein	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA0862: Conserved hypothetical protein	Bradyrhizobium japonicum USDA 110 Gene: bll7767: Conserved hypothetical protein	Bradyrhizobium sp. BTAi1 Gene: BBta_1343: Conserved hypothetical protein	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0918: Conserved hypothetical protein	Azorhizobium caulinodans ORS 571 Gene: AZC_0287: Conserved hypothetical protein	Xanthobacter autotrophicus Py2 Gene: Xaut_2131: Conserved hypothetical protein	Conserved hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --