Regulog Zur - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243	9	3
Burkholderia mallei ATCC 23344	7	3
Burkholderia sp. 383	14	4
Burkholderia cepacia AMMD	5	2
Burkholderia vietnamiensis G4	5	2
Burkholderia glumae BGR1	5	2
Burkholderia xenovorans LB400	8	2
Burkholderia phymatum STM815	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
yciC	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	* Burkholderia sp. 383 Site: position = -8 score = 6.0552 sequence = GAAATGATATGTTATATCGTTGC Gene: Bcep18194_B0316: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
folE2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_B0317: GTP cyclohydrolase I (EC 3.5.4.16) type 2	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	GTP cyclohydrolase I (EC 3.5.4.16) type 2
queD2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_B0318: 6-pyruvoyl-tetrahydropterin synthase-like	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	6-pyruvoyl-tetrahydropterin synthase-like
can2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_B0319: Carbonic anhydrase	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Carbonic anhydrase
pyrC2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_B0320: Dihydroorotase (EC 3.5.2.3)	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Dihydroorotase (EC 3.5.2.3)

CRON 2.
omr2	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -165 score = 4.93616 sequence = TGAATGTAATGATATAACATTCC Gene: Bxe_B0900: Predicted zinc-related TonB-dependent outer membrane transporter	Burkholderia phymatum STM815	Predicted zinc-related TonB-dependent outer membrane transporter
exbB	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B0899: Biopolymer transport protein, MotA/TolQ/ExbB proton channel family protein	Burkholderia phymatum STM815	Biopolymer transport protein, MotA/TolQ/ExbB proton channel family protein
exbD	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B0898: Biopolymer transport protein ExbD/TolR	Burkholderia phymatum STM815	Biopolymer transport protein ExbD/TolR
tonB	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_B0897: Biopolymer transport protein, TonB protein	Burkholderia phymatum STM815	Biopolymer transport protein, TonB protein

CRON 3.
omr1	* Burkholderia pseudomallei K96243 Site: position = -303 score = 5.84261 sequence = CGGATGATATGTTATATCATCGT Gene: BPSL2724: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia mallei ATCC 23344 Site: position = -301 score = 5.84261 sequence = CGGATGATATGTTATATCATCGT Gene: BMA2036: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia sp. 383 Site: position = -209 score = 5.31911 sequence = GAATTGATATTTTGTATCATCTG Gene: Bcep18194_A4489: Predicted zinc-related TonB-dependent outer membrane transporter	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1 Gene: bglu_2g14800: Predicted zinc-related TonB-dependent outer membrane transporter	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Predicted zinc-related TonB-dependent outer membrane transporter
fecE	Burkholderia pseudomallei K96243 Gene: BPSL2723: Iron-siderophore ABC transport system, ATP-binding protein	Burkholderia mallei ATCC 23344 Gene: BMA2035: Iron-siderophore ABC transport system, ATP-binding protein	Burkholderia sp. 383 Gene: Bcep18194_A4490: Iron-siderophore ABC transport system, ATP-binding protein	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1 Gene: bglu_2g14790: Iron-siderophore ABC transport system, ATP-binding protein	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Iron-siderophore ABC transport system, ATP-binding protein
fecC	Burkholderia pseudomallei K96243 Gene: BPSL2722: Iron-siderophore ABC transport system, substrate-binding protein	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_A4491: Iron-siderophore ABC transport system, substrate-binding protein	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1 Gene: bglu_2g14780: Iron-siderophore ABC transport system, substrate-binding protein	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Iron-siderophore ABC transport system, substrate-binding protein
fecD	Burkholderia pseudomallei K96243 Gene: BPSL2721: Iron-siderophore ABC transport system, permease protein	Burkholderia mallei ATCC 23344	Burkholderia sp. 383 Gene: Bcep18194_A4492: Iron-siderophore ABC transport system, permease protein	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1 Gene: bglu_2g14770: Iron-siderophore ABC transport system, permease protein	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Iron-siderophore ABC transport system, permease protein

CRON 4.
zur	* Burkholderia pseudomallei K96243 Site: position = -51 score = 6.00912 sequence = GCGCGGATACGTTATATCATCAC Gene: BPSL0825: Zinc uptake regulation protein Zur	* Burkholderia mallei ATCC 23344 Site: position = 9 score = 6.00912 sequence = GCGCGGATACGTTATATCATCAC Gene: BMA0329: Zinc uptake regulation protein Zur	* Burkholderia sp. 383 Site: position = -53 score = 6.12717 sequence = ACGGCGATACGTTATATCATCGC Gene: Bcep18194_A5930: Zinc uptake regulation protein Zur	* Burkholderia cepacia AMMD Site: position = -54 score = 6.29513 sequence = AGGGAGATACGTTATATCATCGC Gene: Bamb_2647: Zinc uptake regulation protein Zur	* Burkholderia vietnamiensis G4 Site: position = -53 score = 6.32398 sequence = GGCGAGATACGTTATATCATCGC Gene: Bcep1808_2713: Zinc uptake regulation protein Zur	* Burkholderia glumae BGR1 Site: position = -53 score = 5.54648 sequence = GGCTGGATACGTTATATCATCCG Gene: bglu_1g29530: Zinc uptake regulation protein Zur	* Burkholderia xenovorans LB400 Site: position = -84 score = 6.18522 sequence = ATCGAGATACGTTATATCATTGC Gene: Bxe_A0718: Zinc uptake regulation protein Zur	* Burkholderia phymatum STM815 Site: position = -59 score = 6.02402 sequence = TTCGAGATACGTTATATCATTGC Gene: Bphy_0488: Zinc uptake regulation protein Zur	Zinc uptake regulation protein Zur
znuA	Burkholderia pseudomallei K96243 Gene: BPSL0824: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia mallei ATCC 23344 Gene: BMA0328: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia sp. 383 Gene: Bcep18194_A5931: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia cepacia AMMD Gene: Bamb_2648: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia vietnamiensis G4 Gene: Bcep1808_2714: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia glumae BGR1 Gene: bglu_1g29540: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia xenovorans LB400 Gene: Bxe_A0717: Zinc ABC transporter, periplasmic-binding protein ZnuA	Burkholderia phymatum STM815 Gene: Bphy_0487: Zinc ABC transporter, periplasmic-binding protein ZnuA	Zinc ABC transporter, periplasmic-binding protein ZnuA
znuC	Burkholderia pseudomallei K96243 Gene: BPSL0823: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia mallei ATCC 23344 Gene: BMA0327: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia sp. 383 Gene: Bcep18194_A5932: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia cepacia AMMD Gene: Bamb_2649: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia vietnamiensis G4 Gene: Bcep1808_2715: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia glumae BGR1 Gene: bglu_1g29550: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia xenovorans LB400 Gene: Bxe_A0716: Zinc ABC transporter, ATP-binding protein ZnuC	Burkholderia phymatum STM815 Gene: Bphy_0486: Zinc ABC transporter, ATP-binding protein ZnuC	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Burkholderia pseudomallei K96243 Gene: BPSL0822: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia mallei ATCC 23344 Gene: BMA0326: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia sp. 383 Gene: Bcep18194_A5933: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia cepacia AMMD Gene: Bamb_2650: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia vietnamiensis G4 Gene: Bcep1808_2716: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia glumae BGR1 Gene: bglu_1g29560: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia xenovorans LB400 Gene: Bxe_A0715: Zinc ABC transporter, inner membrane permease protein ZnuB	Burkholderia phymatum STM815 Gene: Bphy_0485: Zinc ABC transporter, inner membrane permease protein ZnuB	Zinc ABC transporter, inner membrane permease protein ZnuB

CRON 5.
omr	* Burkholderia pseudomallei K96243 Site: position = -87 score = 6.08335 sequence = ATATTGATACGTTATATCGTTTC Site: position = -199 score = 4.79213 sequence = GAAATGATATAACATATCGATAC Gene: BPSS1850: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia mallei ATCC 23344 Site: position = -87 score = 6.08335 sequence = ATATTGATACGTTATATCGTTTC Site: position = -199 score = 4.79213 sequence = GAAATGATATAACATATCGATAC Gene: BMAA0251: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia sp. 383 Site: position = -182 score = 5.70093 sequence = GAAATGATATAACATATCATTTC Gene: Bcep18194_B1524: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia cepacia AMMD Site: position = -217 score = 5.75624 sequence = GAGATGATATAACATATCATTTC Gene: Bamb_3871: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia vietnamiensis G4 Site: position = -179 score = 4.92682 sequence = GAAATGATATAACGTATCATCTT Site: position = -74 score = 5.09241 sequence = ACGATGCAACAATATATCGTTTC Gene: Bcep1808_4992: Predicted zinc-related TonB-dependent outer membrane transporter	* Burkholderia glumae BGR1 Site: position = -197 score = 5.92076 sequence = AAAATGATACGTTATATCGTGTC Gene: bglu_2g16600: Predicted zinc-related TonB-dependent outer membrane transporter	Burkholderia xenovorans LB400	Burkholderia phymatum STM815	Predicted zinc-related TonB-dependent outer membrane transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --