Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Lactobacillus sakei subsp. sakei 23K

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AguR Agmatine utilization 1 1
TF AraR Arabinose Arabinose utilization 3 3
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 2 1
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 39 36
TF CcpB unknown 1 1
TF CcpN Gluconeogenesis 3 2
TF CggR Fructose-1,6-bisphosphate Glycolysis 1 1
TF CopR Copper ion, (Cu2+) Copper homeostasis 1 1
TF CtsR Heat shock Heat shock response 7 5
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 2 1
TF ExuR Galacturonate; Glucuronate Glucuronate utilization; Galacturonate utilization 1 1
TF FlpA Oxygen Heavy metal resistance 2 2
TF FlrR Drug resistance 2 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF GalR Galactose Galactosides utilization; Galactose utilization 5 3
TF GlnR Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 2 1
TF GntR1 Gluconate Gluconate utilization 2 2
TF HrcA Heat shock Heat shock response 6 4
TF LexA DNA damage SOS response 10 7
TF Lp_2742 Multidrug efflux; Multidrug resistance 2 1
TF MleR L-malate Malate utilization 2 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 5 6
TF NiaR Niacin NAD biosynthesis 2 1
TF NihR Nickel homeostasis 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 4 4
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 2 1
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 2 2
TF PerR Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide Manganese homeostasis; Oxidative stress response; Iron homeostasis 5 4
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 11 7
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 9 7
TF ScrR Sucrose-6-phosphate Sucrose utilization 3 4
TF SdaR D-glycerate Glycerate utilization 2 1
TF TreR Trehalose-6-phosphate Trehalose utilization 2 2
TF YtrA Hypothetical ABC transporter 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 1 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA PyrR PyrR Pyrimidine metabolism 5 4
RNA S15 Ribosome biogenesis 1 1
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 1 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 2 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 2
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA THF Tetrahydrofolate Folate metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 1 1
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