Regulon of CcpA in Lactobacillus sakei subsp. sakei 23K
| Regulator type: | Transcription factor |
| TF locus tag: | LSA0415 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 62 |
| - Operons | 29 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -95
Score: 4.1 Sequence: ATAAAAGGGCTTTAAT
Locus tag: LSA1170
Name: glpF2 Funciton: Glycerol uptake facilitator protein |
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glpF2
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Glycerol uptake facilitator protein
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Position: -39
Score: 4.8 Sequence: ATGGAAACGATTTCAA
Locus tag: LSA1702
Name: adhA Funciton: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1) |
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adhA
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Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
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Position: -65
Score: 4.4 Sequence: TTTAAAGCGCTTTTTT
Locus tag: LSA1685
Name: rpiA Funciton: Ribose 5-phosphate isomerase A (EC 5.3.1.6) |
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rpiA
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Ribose 5-phosphate isomerase A (EC 5.3.1.6)
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Position: -114
Score: 4.3 Sequence: TGTAAACCGTTTTCAA
Locus tag: LSA0200
Name: rbsU Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSA0202
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR Funciton: Ribose operon transcriptional regulator, LacI family |
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rbsU
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Ribose uptake protein RbsU (TC 2.A.7.5)
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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rbsK
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Ribokinase (EC 2.7.1.15)
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rbsR
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Ribose operon transcriptional regulator, LacI family
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Position: -44
Score: 3.8 Sequence: ATGTAACCGTTTAGCA
Locus tag: LSA0138
Name: coaA Funciton: Pantothenate kinase (EC 2.7.1.33)
Locus tag: LSA0139
Name: guaA Funciton: GMP synthase (EC 6.3.5.2) |
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coaA
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Pantothenate kinase (EC 2.7.1.33)
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guaA
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GMP synthase (EC 6.3.5.2)
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Position: -71
Score: 4.1 Sequence: TTTGTAACGCTTACAA
Locus tag: LSA1830
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
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spxB
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Pyruvate oxidase (EC 1.2.3.3)
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Position: -89
Score: 4.8 Sequence: TTGTAATCGATTTCAA
Locus tag: LSA1188
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
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spxB
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Pyruvate oxidase (EC 1.2.3.3)
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Position: -74
Score: 3.9 Sequence: TGAAAAGCGTTCTCAT
Locus tag: LSA1113
Name: sufC Funciton: Iron-sulfur cluster assembly ATPase protein
Locus tag: LSA1112
Name: sufD Funciton: Iron-sulfur cluster assembly protein
Locus tag: LSA1111
Name: sufS Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: LSA1110
Name: sufA Funciton: Fe-S cluster formation protein, NifU-like
Locus tag: LSA1109
Name: sufB Funciton: Fe-S cluster assembly ABC-type transport system, permease component |
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sufC
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Iron-sulfur cluster assembly ATPase protein
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sufD
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Iron-sulfur cluster assembly protein
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sufS
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Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
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sufA
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Fe-S cluster formation protein, NifU-like
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sufB
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Fe-S cluster assembly ABC-type transport system, permease component
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Position: -130
Score: 4 Sequence: ATGAAAACCTTTACAC
Position: -40
Score: 4.3 Sequence: TTGTAAACGATGACAT
Locus tag: LSA1048
Name: fruR Funciton: Fructose utilization transcriptional regulator FruR, DeoR family
Locus tag: LSA1049
Name: fruB Funciton: 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: LSA1050
Name: fruA Funciton: Fructose-specific PTS system, IIABC component (EC 2.7.1.69) |
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fruR
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Fructose utilization transcriptional regulator FruR, DeoR family
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fruB
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1-phosphofructokinase (EC 2.7.1.56)
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fruA
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Fructose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -20
Score: 4.3 Sequence: ATGAAAGGGGTTTTAT
Locus tag: LSA0934
Name: lplA1 Funciton: Lipoate-protein ligase A |
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lplA1
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Lipoate-protein ligase A
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Position: -115
Score: 4 Sequence: TGTAAAACGCTTGCAT
Locus tag: LSA1085
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSA1084
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSA1083
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSA1082
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component |
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pdhA
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
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pdhB
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
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pdhC
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
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pdhD
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
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Position: -105
Score: 4.4 Sequence: TTGTAAACGGTTCAAA
Locus tag: LSA1200
Name: treP Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Locus tag: LSA1199
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
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treP
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Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
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treA
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Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
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Position: -145
Score: 4.2 Sequence: GTAAAAGCGCTTTCTG
Position: -82
Score: 4.4 Sequence: TTTGAACCGTTTACAA
Locus tag: LSA1201
Name: treR Funciton: Trehalose utilization transcriptional regulator TreR, GntR family |
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treR
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Trehalose utilization transcriptional regulator TreR, GntR family
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Position: -99
Score: 4.1 Sequence: ACGAAATCGCTTTAAA
Locus tag: LSA1146
Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
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pmi
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Mannose-6-phosphate isomerase (EC 5.3.1.8)
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Position: -147
Score: 4.2 Sequence: TTTGTAACGCTTTCAT
Position: -55
Score: 4.1 Sequence: CGGTAAGCGTTATCAT
Locus tag: LSA0122
Name: dhaT Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202) |
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dhaT
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1,3-propanediol dehydrogenase (EC 1.1.1.202)
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Position: -66
Score: 4.3 Sequence: TTGTAAACGATTCTAA
Locus tag: LSA0542
Name: adhX Funciton: Zn conatining alcohol dehydrogenase |
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adhX
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Zn conatining alcohol dehydrogenase
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Position: -74
Score: 4.5 Sequence: TTACAAACGGTTTCAA
Locus tag: LSA0379
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -120
Score: 4.1 Sequence: ATGCAAGCGGTTTACA
Locus tag: LSA0414
Name: pepQ Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9) |
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pepQ
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Xaa-Pro dipeptidase (EC 3.4.13.9)
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Position: -188
Score: 4.5 Sequence: TTGTAAACGCTTTTCA
Position: -163
Score: 4.3 Sequence: ATACAACCGTTTACAT
Position: -59
Score: 4.1 Sequence: TATCAAACGTTTACAT
Locus tag: LSA1793
Name: scrB Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Locus tag: LSA1794
Name: scrR Funciton: Sucrose operon repressor ScrR, LacI family |
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scrB
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Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
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scrR
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Sucrose operon repressor ScrR, LacI family
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Position: -45
Score: 4.5 Sequence: ATGTAACCGATTGCAT
Locus tag: LSA0260
Name: yghZ Funciton: Predicted oxidoreductase, aryl-alcohol dehydrogenase related |
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yghZ
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Predicted oxidoreductase, aryl-alcohol dehydrogenase related
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Position: -36
Score: 4.5 Sequence: ATGTAAACGCAAACAA
Locus tag: LSA0299
Name: gntP Funciton: H+/gluconate symporter related permease |
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gntP
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H+/gluconate symporter related permease
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Position: -183
Score: 4.2 Sequence: ATGTAAACGTTTGATA
Position: -54
Score: 4.5 Sequence: TGAAAAGCGTTTACAA
Locus tag: LSA1792
Name: scrA Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) |
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scrA
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Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -136
Score: 4.2 Sequence: AGTAAAGCGTTTTAAA
Position: -57
Score: 4.6 Sequence: TTGTTAGCGTTTTTAT
Locus tag: LSA0449
Name: manL Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LSA0450
Name: manM Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSA0451
Name: manN Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LSA0452
Name: manO Funciton: Predicted regulator of the mannose operon, ManO |
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manL
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Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
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manM
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Mannose-specific PTS system, IIC component (EC 2.7.1.69)
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manN
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Mannose-specific PTS system, IID component (EC 2.7.1.69)
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manO
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Predicted regulator of the mannose operon, ManO
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Position: -78
Score: 4.7 Sequence: TTGAAACCGTTTTATA
Locus tag: LSA1860
Name: araE Funciton: Arabinose-proton symporter
Locus tag: LSA1859
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LSA1857
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: LSA1856
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
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araE
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Arabinose-proton symporter
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araB
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Ribulokinase (EC 2.7.1.16)
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araD
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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araA
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L-arabinose isomerase (EC 5.3.1.4)
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Position: -37
Score: 4.9 Sequence: ATGAAACCGTTTTAAT
Locus tag: LSA1711
Name: lacL Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LSA1710
Name: lacM Funciton: Beta-galactosidase small subunit (EC 3.2.1.23) |
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lacL
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Beta-galactosidase large subunit (EC 3.2.1.23)
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lacM
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Beta-galactosidase small subunit (EC 3.2.1.23)
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Position: -174
Score: 4.8 Sequence: TTGACAACGCTTACAT
Locus tag: LSA0428
Name: lp_0827 Funciton: Conserved hypothetical protein |
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lp_0827
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Conserved hypothetical protein
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Position: -42
Score: 4.3 Sequence: TTGTAAGCGTAGTCAA
Locus tag: LSA0067
Name: ptcA Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: LSA0068
Name: aguD Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0069
Name: aguD Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0070
Name: aguA1 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0071
Name: arcC2 Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LSA0072
Name: aguA2 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0073
Name: LVIS_2205 Funciton: Transcriptional regulator, RpiR family |
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ptcA
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Putrescine carbamoyltransferase (EC 2.1.3.6)
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aguD
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Agmatine:putrescine antiporter
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aguD
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Agmatine:putrescine antiporter
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aguA1
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Agmatine iminohydrolase (EC 3.5.3.12)
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arcC2
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Carbamate kinase (EC 2.7.2.2)
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aguA2
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Agmatine iminohydrolase (EC 3.5.3.12)
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LVIS_2205
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Transcriptional regulator, RpiR family
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Position: -43
Score: 4.3 Sequence: AAGGAAACGTTTTCCA
Locus tag: LSA0649
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSA0650
Name: glpD Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSA0651
Name: glpF Funciton: Glycerol uptake facilitator protein |
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glpK
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Glycerol kinase (EC 2.7.1.30)
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glpD
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Alpha-glycerophosphate oxidase (EC 1.1.3.21)
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glpF
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Glycerol uptake facilitator protein
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Position: -31
Score: 4.5 Sequence: ATGAAAGCGATTAATA
Locus tag: LSA0764
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSA0765
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSA0766
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LSA0767
Name: galM Funciton: Aldose 1-epimerase (EC 5.1.3.3) |
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galK
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Galactokinase (EC 2.7.1.6)
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galE
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UDP-glucose 4-epimerase (EC 5.1.3.2)
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galT
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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galM
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Aldose 1-epimerase (EC 5.1.3.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |