Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Lactobacillus sakei subsp. sakei 23K

Properties
Regulator type: Transcription factor
TF locus tag: LSA0415
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Regulog: CcpA - Lactobacillaceae
Statistics of regulated genes:
- Genes 62
- Operons 29
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 561 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -95
Score: 4.1
Sequence: ATAAAAGGGCTTTAAT
Locus tag: LSA1170
Name: glpF2
Funciton: Glycerol uptake facilitator protein
LSA1170
glpF2
Glycerol uptake facilitator protein
Position: -39
Score: 4.8
Sequence: ATGGAAACGATTTCAA
Locus tag: LSA1702
Name: adhA
Funciton: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
LSA1702
adhA
Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
Position: -65
Score: 4.4
Sequence: TTTAAAGCGCTTTTTT
Locus tag: LSA1685
Name: rpiA
Funciton: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
LSA1685
rpiA
Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Position: -114
Score: 4.3
Sequence: TGTAAACCGTTTTCAA
Locus tag: LSA0200
Name: rbsU
Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSA0202
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR
Funciton: Ribose operon transcriptional regulator, LacI family
LSA0200
rbsU
Ribose uptake protein RbsU (TC 2.A.7.5)
LSA0201
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
LSA0202
rbsK
Ribokinase (EC 2.7.1.15)
LSA0203
rbsR
Ribose operon transcriptional regulator, LacI family
Position: -44
Score: 3.8
Sequence: ATGTAACCGTTTAGCA
Locus tag: LSA0138
Name: coaA
Funciton: Pantothenate kinase (EC 2.7.1.33)
Locus tag: LSA0139
Name: guaA
Funciton: GMP synthase (EC 6.3.5.2)
LSA0138
coaA
Pantothenate kinase (EC 2.7.1.33)
LSA0139
guaA
GMP synthase (EC 6.3.5.2)
Position: -71
Score: 4.1
Sequence: TTTGTAACGCTTACAA
Locus tag: LSA1830
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
LSA1830
spxB
Pyruvate oxidase (EC 1.2.3.3)
Position: -89
Score: 4.8
Sequence: TTGTAATCGATTTCAA
Locus tag: LSA1188
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
LSA1188
spxB
Pyruvate oxidase (EC 1.2.3.3)
Position: -74
Score: 3.9
Sequence: TGAAAAGCGTTCTCAT
Locus tag: LSA1113
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein
Locus tag: LSA1112
Name: sufD
Funciton: Iron-sulfur cluster assembly protein
Locus tag: LSA1111
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: LSA1110
Name: sufA
Funciton: Fe-S cluster formation protein, NifU-like
Locus tag: LSA1109
Name: sufB
Funciton: Fe-S cluster assembly ABC-type transport system, permease component
LSA1113
sufC
Iron-sulfur cluster assembly ATPase protein
LSA1112
sufD
Iron-sulfur cluster assembly protein
LSA1111
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
LSA1110
sufA
Fe-S cluster formation protein, NifU-like
LSA1109
sufB
Fe-S cluster assembly ABC-type transport system, permease component
Position: -130
Score: 4
Sequence: ATGAAAACCTTTACAC
Position: -40
Score: 4.3
Sequence: TTGTAAACGATGACAT
Locus tag: LSA1048
Name: fruR
Funciton: Fructose utilization transcriptional regulator FruR, DeoR family
Locus tag: LSA1049
Name: fruB
Funciton: 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: LSA1050
Name: fruA
Funciton: Fructose-specific PTS system, IIABC component (EC 2.7.1.69)
LSA1048
fruR
Fructose utilization transcriptional regulator FruR, DeoR family
LSA1049
fruB
1-phosphofructokinase (EC 2.7.1.56)
LSA1050
fruA
Fructose-specific PTS system, IIABC component (EC 2.7.1.69)
Position: -20
Score: 4.3
Sequence: ATGAAAGGGGTTTTAT
Locus tag: LSA0934
Name: lplA1
Funciton: Lipoate-protein ligase A
LSA0934
lplA1
Lipoate-protein ligase A
Position: -115
Score: 4
Sequence: TGTAAAACGCTTGCAT
Locus tag: LSA1085
Name: pdhA
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSA1084
Name: pdhB
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSA1083
Name: pdhC
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSA1082
Name: pdhD
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
LSA1085
pdhA
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
LSA1084
pdhB
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
LSA1083
pdhC
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
LSA1082
pdhD
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
Position: -105
Score: 4.4
Sequence: TTGTAAACGGTTCAAA
Locus tag: LSA1200
Name: treP
Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Locus tag: LSA1199
Name: treA
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
LSA1200
treP
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
LSA1199
treA
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Position: -145
Score: 4.2
Sequence: GTAAAAGCGCTTTCTG
Position: -82
Score: 4.4
Sequence: TTTGAACCGTTTACAA
Locus tag: LSA1201
Name: treR
Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
LSA1201
treR
Trehalose utilization transcriptional regulator TreR, GntR family
Position: -99
Score: 4.1
Sequence: ACGAAATCGCTTTAAA
Locus tag: LSA1146
Name: pmi
Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
LSA1146
pmi
Mannose-6-phosphate isomerase (EC 5.3.1.8)
Position: -147
Score: 4.2
Sequence: TTTGTAACGCTTTCAT
Position: -55
Score: 4.1
Sequence: CGGTAAGCGTTATCAT
Locus tag: LSA0122
Name: dhaT
Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
LSA0122
dhaT
1,3-propanediol dehydrogenase (EC 1.1.1.202)
Position: -66
Score: 4.3
Sequence: TTGTAAACGATTCTAA
Locus tag: LSA0542
Name: adhX
Funciton: Zn conatining alcohol dehydrogenase
LSA0542
adhX
Zn conatining alcohol dehydrogenase
Position: -74
Score: 4.5
Sequence: TTACAAACGGTTTCAA
Locus tag: LSA0379
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
LSA0379
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -120
Score: 4.1
Sequence: ATGCAAGCGGTTTACA
Locus tag: LSA0414
Name: pepQ
Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9)
LSA0414
pepQ
Xaa-Pro dipeptidase (EC 3.4.13.9)
Position: -188
Score: 4.5
Sequence: TTGTAAACGCTTTTCA
Position: -163
Score: 4.3
Sequence: ATACAACCGTTTACAT
Position: -59
Score: 4.1
Sequence: TATCAAACGTTTACAT
Locus tag: LSA1793
Name: scrB
Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Locus tag: LSA1794
Name: scrR
Funciton: Sucrose operon repressor ScrR, LacI family
LSA1793
scrB
Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
LSA1794
scrR
Sucrose operon repressor ScrR, LacI family
Position: -45
Score: 4.5
Sequence: ATGTAACCGATTGCAT
Locus tag: LSA0260
Name: yghZ
Funciton: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
LSA0260
yghZ
Predicted oxidoreductase, aryl-alcohol dehydrogenase related
Position: -36
Score: 4.5
Sequence: ATGTAAACGCAAACAA
Locus tag: LSA0299
Name: gntP
Funciton: H+/gluconate symporter related permease
LSA0299
gntP
H+/gluconate symporter related permease
Position: -183
Score: 4.2
Sequence: ATGTAAACGTTTGATA
Position: -54
Score: 4.5
Sequence: TGAAAAGCGTTTACAA
Locus tag: LSA1792
Name: scrA
Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
LSA1792
scrA
Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Position: -136
Score: 4.2
Sequence: AGTAAAGCGTTTTAAA
Position: -57
Score: 4.6
Sequence: TTGTTAGCGTTTTTAT
Locus tag: LSA0449
Name: manL
Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LSA0450
Name: manM
Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSA0451
Name: manN
Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LSA0452
Name: manO
Funciton: Predicted regulator of the mannose operon, ManO
LSA0449
manL
Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
LSA0450
manM
Mannose-specific PTS system, IIC component (EC 2.7.1.69)
LSA0451
manN
Mannose-specific PTS system, IID component (EC 2.7.1.69)
LSA0452
manO
Predicted regulator of the mannose operon, ManO
Position: -78
Score: 4.7
Sequence: TTGAAACCGTTTTATA
Locus tag: LSA1860
Name: araE
Funciton: Arabinose-proton symporter
Locus tag: LSA1859
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LSA1857
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: LSA1856
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
LSA1860
araE
Arabinose-proton symporter
LSA1859
araB
Ribulokinase (EC 2.7.1.16)
LSA1857
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
LSA1856
araA
L-arabinose isomerase (EC 5.3.1.4)
Position: -37
Score: 4.9
Sequence: ATGAAACCGTTTTAAT
Locus tag: LSA1711
Name: lacL
Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LSA1710
Name: lacM
Funciton: Beta-galactosidase small subunit (EC 3.2.1.23)
LSA1711
lacL
Beta-galactosidase large subunit (EC 3.2.1.23)
LSA1710
lacM
Beta-galactosidase small subunit (EC 3.2.1.23)
Position: -174
Score: 4.8
Sequence: TTGACAACGCTTACAT
Locus tag: LSA0428
Name: lp_0827
Funciton: Conserved hypothetical protein
LSA0428
lp_0827
Conserved hypothetical protein
Position: -42
Score: 4.3
Sequence: TTGTAAGCGTAGTCAA
Locus tag: LSA0067
Name: ptcA
Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: LSA0068
Name: aguD
Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0069
Name: aguD
Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0070
Name: aguA1
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0071
Name: arcC2
Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LSA0072
Name: aguA2
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0073
Name: LVIS_2205
Funciton: Transcriptional regulator, RpiR family
LSA0067
ptcA
Putrescine carbamoyltransferase (EC 2.1.3.6)
LSA0068
aguD
Agmatine:putrescine antiporter
LSA0069
aguD
Agmatine:putrescine antiporter
LSA0070
aguA1
Agmatine iminohydrolase (EC 3.5.3.12)
LSA0071
arcC2
Carbamate kinase (EC 2.7.2.2)
LSA0072
aguA2
Agmatine iminohydrolase (EC 3.5.3.12)
LSA0073
LVIS_2205
Transcriptional regulator, RpiR family
Position: -43
Score: 4.3
Sequence: AAGGAAACGTTTTCCA
Locus tag: LSA0649
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSA0650
Name: glpD
Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSA0651
Name: glpF
Funciton: Glycerol uptake facilitator protein
LSA0649
glpK
Glycerol kinase (EC 2.7.1.30)
LSA0650
glpD
Alpha-glycerophosphate oxidase (EC 1.1.3.21)
LSA0651
glpF
Glycerol uptake facilitator protein
Position: -31
Score: 4.5
Sequence: ATGAAAGCGATTAATA
Locus tag: LSA0764
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSA0765
Name: galE
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSA0766
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LSA0767
Name: galM
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
LSA0764
galK
Galactokinase (EC 2.7.1.6)
LSA0765
galE
UDP-glucose 4-epimerase (EC 5.1.3.2)
LSA0766
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
LSA0767
galM
Aldose 1-epimerase (EC 5.1.3.3)
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