Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Colwellia psychrerythraea 34H

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 7
TF BglR Beta-glucoside Beta-glucosides utilization 4 8
TF BirA Biotin Biotin biosynthesis 2 2
TF CPS_0449 Multidrug resistance; Multidrug efflux 1 1
TF CPS_3393 Metabolite transport 1 1
TF CPS_4612 Metabolite transport 1 1
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 2
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 7 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 19 13
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 18 5
TF HutC cis-Urocanic acid Histidine utilization 5 5
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 7 6
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 5
TF LexA DNA damage SOS response 12 13
TF LiuR Branched-chain amino acid degradation 12 8
TF MalR Maltose Maltose utilization; Maltodextrin utilization 7 12
TF ManR1 Mannose Mannosides utilization; Mannose utilization 3 4
TF MdeR Methionine metabolism 2 4
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 16 15
TF MetR Homocysteine Methionine biosynthesis 6 2
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 13 11
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 3 3
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 5 10
TF PsrA Oleate Fatty acid degradation 11 10
TF RutR Uracil Pyrimidine utilization 7 3
TF TreR Trehalose Trehalose utilization 4 8
TF TyrR1 Tyrosine; Phenylalanine Aromatic amino acid metabolism 6 4
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 5
RNA MOCO_RNA_motif Molybdenum Molybdenum homeostasis; Molybdopterin biosynthesis 1 1
RNA TPP 2 2
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