Regulon of RutR in Colwellia psychrerythraea 34H

Properties
Regulator type:	Transcription factor
TF locus tag:	CPS_1965, CPS_4876
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Alteromonadales
Statistics of regulated genes:
- Genes	13
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Alteromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -70 Score: 5.8 Sequence: ACTTGACCATATGGTCAGCA Locus tag: CPS_1969 Name: cdd Funciton: Cytidine deaminase (EC 3.5.4.5) Locus tag: CPS_1970 Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4)
	CPS_1969	cdd	Cytidine deaminase (EC 3.5.4.5)
	CPS_1970	deoA	Thymidine phosphorylase (EC 2.4.2.4)
Position: -94 Score: 3.5 Sequence: AGCTGACACTTGTGTCAACT Locus tag: CPS_4864 Name: xdhA Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) Locus tag: CPS_4865 Name: xdhB Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: CPS_4866 Name: xdhC Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) Locus tag: CPS_4867 Name: allB Funciton: Allantoinase (EC 3.5.2.5) Locus tag: CPS_4868 Name: allC Funciton: Allantoicase (EC 3.5.3.4) Locus tag: CPS_4869 Name: pucL Funciton: Uricase (EC 1.7.3.3) Locus tag: CPS_4870 Name: pucM Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17) Locus tag: CPS_4871 Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19) Locus tag: CPS_4872 Name: guaD Funciton: Guanine deaminase (EC 3.5.4.3)
	CPS_4864	xdhA	Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
	CPS_4865	xdhB	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
	CPS_4866	xdhC	XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
	CPS_4867	allB	Allantoinase (EC 3.5.2.5)
	CPS_4868	allC	Allantoicase (EC 3.5.3.4)
	CPS_4869	pucL	Uricase (EC 1.7.3.3)
	CPS_4870	pucM	Hydroxyisourate hydrolase (EC 3.5.2.17)
	CPS_4871	allA	Ureidoglycolate hydrolase (EC 3.5.3.19)
	CPS_4872	guaD	Guanine deaminase (EC 3.5.4.3)
Position: -182 Score: 5.1 Sequence: CTATGACCAACTGGTCAAGT Locus tag: CPS_1974 Name: udk Funciton: Uridine kinase (EC 2.7.1.48) Locus tag: CPS_1973 Name: nupX Funciton: Nucleoside permease
	CPS_1974	udk	Uridine kinase (EC 2.7.1.48)
	CPS_1973	nupX	Nucleoside permease

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD