Regulog RutR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Alteromonadales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 16 | 7 |
| Alteromonas macleodii 'Deep ecotype' | 13 | 6 |
| Glaciecola sp. HTCC2999 | ||
| Colwellia psychrerythraea 34H | 13 | 3 |
| Alteromonadales bacterium TW-7 | 9 | 2 |
| Pseudoalteromonas haloplanktis TAC125 | ||
| Pseudoalteromonas tunicata D2 | ||
| Idiomarina baltica OS145 | ||
| Idiomarina loihiensis L2TR |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| omp2 |
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Pseudoalteromonas atlantica T6c Site: position = -112 score = 5.73278 sequence = ACCTGACCATTTGGACAAGT Gene: Patl_2225: putative TonB-dependent outer membrane transporter |
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Alteromonas macleodii 'Deep ecotype' Site: position = -124 score = 5.22752 sequence = AGTTGACCAACTGGTTAAGT Gene: MADE_02502: putative TonB-dependent outer membrane transporter |
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putative TonB-dependent outer membrane transporter |
| CRON 2. | ||||||||||
| add2 |
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Pseudoalteromonas atlantica T6c Site: position = -27 score = 5.51419 sequence = GACTGACCATTTGGTCAAAT Gene: Patl_2222: Adenosine deaminase (EC 3.5.4.4) |
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Adenosine deaminase (EC 3.5.4.4) |
| pbuT2 |
Gene: Patl_2223: Xanthine/uracil permease |
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Alteromonas macleodii 'Deep ecotype' Site: position = -353 score = 5.48481 sequence = AACAGACCAGTTGGTCAACA Gene: MADE_02501: Xanthine/uracil permease |
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Xanthine/uracil permease |
| CRON 3. | ||||||||||
| udk |
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Pseudoalteromonas atlantica T6c Site: position = -180 score = 5.32455 sequence = ACTTGACCATATGGTCCACA Gene: Patl_0533: Uridine kinase (EC 2.7.1.48) |
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Alteromonas macleodii 'Deep ecotype' Site: position = -183 score = 4.93652 sequence = AACTGACCACTTGGAGAACT Gene: MADE_00730: Uridine kinase (EC 2.7.1.48) |
Gene: GHTCC_010100007092: Uridine kinase (EC 2.7.1.48) |
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Colwellia psychrerythraea 34H Site: position = -182 score = 5.06412 sequence = CTATGACCAACTGGTCAAGT Gene: CPS_1974: Uridine kinase (EC 2.7.1.48) |
Gene: ATW7_01080: Uridine kinase (EC 2.7.1.48) |
Gene: PSHAb0080: Uridine kinase (EC 2.7.1.48) |
Gene: PTD2_03621: Uridine kinase (EC 2.7.1.48) |
Gene: OS145_01217: Uridine kinase (EC 2.7.1.48) |
Gene: IL1536: Uridine kinase (EC 2.7.1.48) |
Uridine kinase (EC 2.7.1.48) |
| nupX |
Gene: Patl_0532: Nucleoside permease |
Gene: MADE_00729: Nucleoside permease |
Gene: GHTCC_010100007087: Nucleoside permease |
Gene: CPS_1973: Nucleoside permease |
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Gene: PSHAb0079: Nucleoside permease |
Gene: PTD2_03616: Nucleoside permease |
Gene: OS145_01212: Nucleoside permease |
Gene: IL1535: Nucleoside permease |
Nucleoside permease |
| CRON 4. | ||||||||||
| cdd |
Gene: Patl_0790: Cytidine deaminase (EC 3.5.4.5) |
Gene: MADE_01844: Cytidine deaminase (EC 3.5.4.5) |
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Colwellia psychrerythraea 34H Site: position = -70 score = 5.78909 sequence = ACTTGACCATATGGTCAGCA Gene: CPS_1969: Cytidine deaminase (EC 3.5.4.5) |
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Cytidine deaminase (EC 3.5.4.5) |
| deoA |
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Gene: CPS_1970: Thymidine phosphorylase (EC 2.4.2.4) |
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Gene: OS145_10005: Thymidine phosphorylase (EC 2.4.2.4) |
Gene: IL1882: Thymidine phosphorylase (EC 2.4.2.4) |
Thymidine phosphorylase (EC 2.4.2.4) |
| CRON 5. | ||||||||||
| xdhA |
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Pseudoalteromonas atlantica T6c Site: position = -91 score = 5.69836 sequence = ACCTGACCAACTGGTCTGGT Gene: Patl_2424: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) |
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Alteromonas macleodii 'Deep ecotype' Site: position = -83 score = 5.76872 sequence = AATTGACCATTTGGTCTACT Gene: MADE_02515: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) |
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Colwellia psychrerythraea 34H Site: position = -94 score = 3.51291 sequence = AGCTGACACTTGTGTCAACT Gene: CPS_4864: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) |
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Alteromonadales bacterium TW-7 Site: position = -148 score = 4.9395 sequence = AGTTAACCGATCGGTCAGGC Site: position = -328 score = 5.08432 sequence = ACATATCCTTTTGGTCAGGT Gene: ATW7_02017: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) |
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Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) |
| xdhB |
Gene: Patl_2425: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) |
Gene: MADE_02516: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) |
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Gene: CPS_4865: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) |
Gene: ATW7_02012: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) |
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Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) |
| xdhC |
Gene: Patl_2426: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) |
Gene: MADE_02517: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) |
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Gene: CPS_4866: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) |
Gene: ATW7_02007: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) |
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XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) |
| allB |
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Gene: CPS_4867: Allantoinase (EC 3.5.2.5) |
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Allantoinase (EC 3.5.2.5) |
| allC |
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Gene: CPS_4868: Allantoicase (EC 3.5.3.4) |
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Allantoicase (EC 3.5.3.4) |
| pucL |
Gene: Patl_2427: Uricase (EC 1.7.3.3) |
Gene: MADE_02518: Uricase (EC 1.7.3.3) |
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Gene: CPS_4869: Uricase (EC 1.7.3.3) |
Gene: ATW7_02002: Uricase (EC 1.7.3.3) |
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Uricase (EC 1.7.3.3) |
| pucM |
Gene: Patl_2428: Hydroxyisourate hydrolase (EC 3.5.2.17) |
Gene: MADE_02519: Hydroxyisourate hydrolase (EC 3.5.2.17) |
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Gene: CPS_4870: Hydroxyisourate hydrolase (EC 3.5.2.17) |
Gene: ATW7_01997: Hydroxyisourate hydrolase (EC 3.5.2.17) |
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Hydroxyisourate hydrolase (EC 3.5.2.17) |
| allA |
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Gene: CPS_4871: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Ureidoglycolate hydrolase (EC 3.5.3.19) |
| guaD |
Gene: Patl_2429: Guanine deaminase (EC 3.5.4.3) |
Gene: MADE_02520: Guanine deaminase (EC 3.5.4.3) |
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Gene: CPS_4872: Guanine deaminase (EC 3.5.4.3) |
Gene: ATW7_01992: Guanine deaminase (EC 3.5.4.3) |
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Guanine deaminase (EC 3.5.4.3) |
| COG3748 |
Gene: Patl_2430: hypothetical protein, COG3748 |
Gene: MADE_02521: hypothetical protein, COG3748 |
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Gene: CPS_4873: hypothetical protein, COG3748 |
Gene: ATW7_01987: hypothetical protein, COG3748 |
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hypothetical protein, COG3748 |
| COG0726 |
Gene: Patl_2422: putative polysaccharide deacetylase family protein |
Gene: MADE_02512: putative polysaccharide deacetylase family protein |
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Gene: ATW7_01982: putative polysaccharide deacetylase family protein |
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putative polysaccharide deacetylase family protein |
| rutR |
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Pseudoalteromonas atlantica T6c Site: position = -242 score = 5.87522 sequence = ACCAGACCAGTTGGTCAGGT Gene: Patl_2423: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
Gene: MADE_02513: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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Colwellia psychrerythraea 34H Gene: CPS_1965: Transcriptional regulator RutR of pyrimidine catabolism, TetR family Gene: CPS_4876: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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Alteromonadales bacterium TW-7 Site: position = -61 score = 5.32283 sequence = AATTGACCTTTCGGTCAGTA Gene: ATW7_02067: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
| CRON 6. | ||||||||||
| pbuT |
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Pseudoalteromonas atlantica T6c Site: position = -98 score = 5.21399 sequence = GCTAGACTAAATGGTCAGGT Gene: Patl_2421: Xanthine/uracil permease |
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Alteromonas macleodii 'Deep ecotype' Site: position = -71 score = 5.73003 sequence = AGTTGACTAATTGGTCAGTT Gene: MADE_02510: Xanthine/uracil permease |
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Xanthine/uracil permease |
| CRON 7. | ||||||||||
| omp1 |
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Pseudoalteromonas atlantica T6c Site: position = -127 score = 4.29998 sequence = TTTTGACCAGTTAGTCAAAT Gene: Patl_0536: putative TonB-dependent outer membrane transporter |
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Alteromonas macleodii 'Deep ecotype' Site: position = -207 score = 5.68405 sequence = ACTTGACCATGTGGTCAGGT Gene: MADE_00733: putative TonB-dependent outer membrane transporter |
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Gene: CPS_1968: putative TonB-dependent outer membrane transporter |
Gene: ATW7_02752: putative TonB-dependent outer membrane transporter |
Gene: PSHAb0340: putative TonB-dependent outer membrane transporter |
Gene: PTD2_03406: putative TonB-dependent outer membrane transporter |
Gene: OS145_04710: putative TonB-dependent outer membrane transporter |
Gene: IL0583: putative TonB-dependent outer membrane transporter |
putative TonB-dependent outer membrane transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |