Profile of regulator RutR in Alteromonadales
Properties
| Regulator family: |
TetR |
| Regulation mode: |
repressor |
| Biological process: |
Pyrimidine utilization |
| Effector: |
Uracil |
| Regulog: |
RutR - Alteromonadales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Pseudoalteromonas atlantica T6c
|
|
Patl_0536 |
omp1 |
-127 |
4.3 |
TTTTGACCAGTTAGTCAAAT |
|
Patl_0533 |
udk |
-180 |
5.3 |
ACTTGACCATATGGTCCACA |
|
Patl_2222 |
add2 |
-27 |
5.5 |
GACTGACCATTTGGTCAAAT |
|
Patl_2225 |
omp2 |
-112 |
5.7 |
ACCTGACCATTTGGACAAGT |
|
Patl_2423 |
rutR |
-242 |
5.9 |
ACCAGACCAGTTGGTCAGGT |
|
Patl_2421 |
pbuT |
-98 |
5.2 |
GCTAGACTAAATGGTCAGGT |
|
Patl_2424 |
xdhA |
-91 |
5.7 |
ACCTGACCAACTGGTCTGGT |
|
Alteromonas macleodii 'Deep ecotype'
|
|
MADE_02502 |
omp2 |
-124 |
5.2 |
AGTTGACCAACTGGTTAAGT |
|
MADE_00730 |
udk |
-183 |
4.9 |
AACTGACCACTTGGAGAACT |
|
MADE_02501 |
pbuT2 |
-353 |
5.5 |
AACAGACCAGTTGGTCAACA |
|
MADE_00733 |
omp1 |
-207 |
5.7 |
ACTTGACCATGTGGTCAGGT |
|
MADE_02510 |
pbuT |
-71 |
5.7 |
AGTTGACTAATTGGTCAGTT |
|
MADE_02515 |
xdhA |
-83 |
5.8 |
AATTGACCATTTGGTCTACT |
|
Colwellia psychrerythraea 34H
|
|
CPS_1969 |
cdd |
-70 |
5.8 |
ACTTGACCATATGGTCAGCA |
|
CPS_1974 |
udk |
-182 |
5.1 |
CTATGACCAACTGGTCAAGT |
|
CPS_4864 |
xdhA |
-94 |
3.5 |
AGCTGACACTTGTGTCAACT |
|
Alteromonadales bacterium TW-7
|
|
ATW7_02067 |
rutR |
-61 |
5.3 |
AATTGACCTTTCGGTCAGTA |
|
ATW7_02017 |
xdhA |
-148 |
4.9 |
AGTTAACCGATCGGTCAGGC |
|
ATW7_02017 |
xdhA |
-328 |
5.1 |
ACATATCCTTTTGGTCAGGT |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
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