Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Silicibacter pomeroyi DSS-3

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BioR Biotin biosynthesis 2 3
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 17 18
TF Chvl 1 1
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF EutR Ectoine utilization 3 8
TF FnrN Oxygen Oxidative stress response; Nitrogen fixation 10 10
TF HrcA Heat shock Heat shock response 1 1
TF HutC cis-Urocanic acid Histidine utilization 2 5
TF HypR2 4-hydroxyproline Proline and 4-hydrohyproline utilization 3 3
TF Irr Heme Iron homeostasis 7 4
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 7 5
TF LexA DNA damage SOS response 9 7
TF LiuR Branched-chain amino acid degradation 4 1
TF MetR Homocysteine Methionine biosynthesis 3 2
TF ModE2 Molybdate Molybdenum homeostasis 1 1
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 4 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 7 5
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 4 3
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 1 1
TF PhnF Phosphonate utilization 3 2
TF RspR L-gulonate; D-mannonate L-gulonate utilization 3 2
TF RutR Uracil Pyrimidine utilization 8 8
TF SPO0590 Sugar utilization 2 4
TF SPOA0164 2 2
TF SPOA0336 Sugar utilization 2 4
TF SPOA0375 2 2
TF SPOA0379 3 2
TF SoxR Paraquat Superoxide stress response 4 2
TF TauR Taurine Taurine utilization 5 2
TF TauR2 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 6 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 5 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 1
RNA serC Serine biosynthesis 1 1
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