Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN in Silicibacter pomeroyi DSS-3

Properties
Regulator type: Transcription factor
TF locus tag: SPO3531
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN - Rhodobacterales
Statistics of regulated genes:
- Genes 19
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -32
Score: 5.4
Sequence: ACCTTGACTCAGATCAAGTA
Locus tag: SPO3531
Name: fnrN
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
SPO3531
fnrN
Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
Position: -98
Score: 5.7
Sequence: GCTTTGATCTGCATCAAGAC
Locus tag: SPO3527
Name: uspA
Funciton: Predicted universal stress protein UspA
SPO3527
uspA
Predicted universal stress protein UspA
Position: -146
Score: 5.1
Sequence: TAATTGACCCAAGTCAAGGC
Locus tag: SPO2596
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
SPO2596
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -80
Score: 5.4
Sequence: TTTTTGACCCATATCAAAGT
Locus tag: SPO3522
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: SPO3521
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: SPO3520
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: SPO3519
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
SPO3522
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
SPO3521
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
SPO3520
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
SPO3519
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -110
Score: 5.7
Sequence: GTCTTGATGCAGATCAAAGC
Locus tag: SPO3526
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: SPO3525
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: SPO3524
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: SPO3523
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
SPO3526
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
SPO3525
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
SPO3524
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
SPO3523
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -162
Score: 5.6
Sequence: TGTTTGATCCAGATCAAAAA
Locus tag: SPO3076
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: SPO3075
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: SPO3074
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: SPO3073
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
SPO3076
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
SPO3075
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
SPO3074
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
SPO3073
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -96
Score: 5.5
Sequence: CGCTTGATCCATATCAAAGT
Locus tag: SPO0330
Name: ccpR
Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
SPO0330
ccpR
Cytochrome c551 peroxidase (EC 1.11.1.5)
Position: -75
Score: 5.2
Sequence: ATCTTGATCCAGATCAGGGA
Locus tag: SPO2792
Name: ompW
Funciton: Outer membrane protein W precursor
SPO2792
ompW
Outer membrane protein W precursor
Position: -52
Score: 5.4
Sequence: TACTTGATCTGAGTCAAGGT
Locus tag: SPO3532
Name: hemN
Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
SPO3532
hemN
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
Position: -120
Score: 5.6
Sequence: ATCTTGATCCAGATCAAACT
Locus tag: SPO1383
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
SPO1383
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
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