Regulon of IscR in Silicibacter pomeroyi DSS-3
| Regulator type: | Transcription factor |
| TF locus tag: | SPO2025 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron-sulfur cluster biogenesis; Iron homeostasis |
| Effector: | Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
| Regulog: | IscR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - IscR
- By taxonomy - Rhodobacterales
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By effector - Iron ion, (Fe2+)
- By pathway - Iron-sulfur cluster biogenesis
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -141
Score: 4.1 Sequence: CTTGACGAATTCCCTCGGG
Locus tag: SPO2025
Name: iscR Funciton: Iron-sulfur cluster regulator IscR, Rrf2 family |
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iscR
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Iron-sulfur cluster regulator IscR, Rrf2 family
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Position: -99
Score: 4.6 Sequence: GGCGACAAAAATAGTCAGG
Locus tag: SPO0789
Name: hemP Funciton: Hemin uptake protein HemP
Locus tag: SPO0790
Name: null Funciton: hypothetical protein |
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hemP
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Hemin uptake protein HemP
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hypothetical protein
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Position: -88
Score: 5.2 Sequence: ACTGACAAATTTAGTCAGA
Locus tag: SPO0086
Name: irpA Funciton: Iron-regulated protein A precursor
Locus tag: SPO0087
Name: hmuX Funciton: hypothetical porin
Locus tag: SPO0088
Name: COG3488 Funciton: Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
Locus tag: SPO0089
Name: COG3489 Funciton: Predicted periplasmic lipoprotein
Locus tag: SPO0090
Name: COG3490 Funciton: Uncharacterised conserved protein UCP028101 |
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irpA
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Iron-regulated protein A precursor
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hmuX
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hypothetical porin
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COG3488
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Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
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COG3489
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Predicted periplasmic lipoprotein
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COG3490
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Uncharacterised conserved protein UCP028101
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Position: -27
Score: 4.1 Sequence: TCCGACTAAACTGGTCGAT
Locus tag: SPO3288
Name: fbpB Funciton: Ferric iron ABC transporter, permease protein |
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fbpB
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Ferric iron ABC transporter, permease protein
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Position: -50
Score: 4.7 Sequence: CCCGACTGAAATAATCAGT
Locus tag: SPO3287
Name: fbpA Funciton: Ferric iron ABC transporter, iron-binding protein |
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fbpA
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Ferric iron ABC transporter, iron-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |