Regulons of Mesorhizobium sp. BNC1
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
AglR |
Alpha-glucoside; Maltose; Trehalose; Sucrose |
Alpha-glucosides utilization |
2 |
2 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
5 |
5 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
3 |
4 |
| TF |
EutR |
Ethanolamine |
Ethanolamine utilization |
2 |
4 |
| TF |
FixJ |
Oxygen |
Oxidative stress response |
1 |
1 |
| TF |
FnrN/FixK/AadR |
Oxygen |
Oxidative stress response; Nitrogen fixation |
13 |
9 |
| TF |
GlcC |
Glycolate |
Glycolate utilization |
3 |
3 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
5 |
3 |
| TF |
HypR |
Proline |
Proline and 4-hydrohyproline utilization |
4 |
2 |
| TF |
Irr |
Heme |
Iron homeostasis |
15 |
4 |
| TF |
LexA |
DNA damage |
SOS response |
22 |
16 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
7 |
4 |
| TF |
MntR |
Manganese ion, (Mn2+) |
Manganese homeostasis |
3 |
4 |
| TF |
Mur |
Iron ion, (Fe2+) |
Manganese homeostasis |
2 |
2 |
| TF |
NadQ |
|
NAD biosynthesis |
1 |
2 |
| TF |
NnrR |
Nitric oxide |
Denitrification |
14 |
14 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
3 |
3 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
3 |
2 |
| TF |
PckR |
|
Central carbohydrate metabolism |
16 |
8 |
| TF |
PdxR |
|
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
RirA |
Iron ion, (Fe2+) |
Iron homeostasis |
8 |
6 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
7 |
4 |
| TF |
SMb20014 |
|
Sugar utilization |
1 |
1 |
| TF |
SMb20039 |
|
|
1 |
1 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
4 |
3 |
| TF |
XylR |
Xylose |
Xylose utilization |
3 |
3 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
3 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
4 |
3 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
2 |
4 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
2 |
2 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
2 |
2 |
| RNA |
Trp_leader |
|
Tryptophan biosynthesis |
1 |
1 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
| RNA |
speF |
|
Ornithine degradation |
1 |
1 |
| RNA |
ybhL |
|
|
1 |
1 |
| RNA |
yybP-ykoY |
|
|
1 |
1 |
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