# TF - NadQ: Meso_2558 >Meso_2557(nadA) Score=5.2 Pos=-60 [Mesorhizobium sp. BNC1] TTATGCTCAGCGCAAGCATAT >Meso_2557(nadA) Score=6.1 Pos=-34 [Mesorhizobium sp. BNC1] ATATGCTCAATCGGAGCATAA # TF - NrdR: Meso_1135 >Meso_1332(nrdJ) Score=5.2 Pos=-530 [Mesorhizobium sp. BNC1] ACACAATATCTAGCGT >Meso_1332(nrdJ) Score=4.7 Pos=-284 [Mesorhizobium sp. BNC1] ATGCTATATTTAGCGT >Meso_2703(nrdA) Score=3.9 Pos=-310 [Mesorhizobium sp. BNC1] CTACTAAATATAGCCC # TF - SahR: Meso_2029 >Meso_2029(sahR) Score=7 Pos=-36 [Mesorhizobium sp. BNC1] ATATAAACATATCTTTATAT >Meso_0328(metH) Score=6.9 Pos=-53 [Mesorhizobium sp. BNC1] ACATAAAGATATCTTTATGT >Meso_3576(ahcY) Score=6 Pos=-106 [Mesorhizobium sp. BNC1] GAATAAAGATTTCTTTATAT # TF - Zur: Meso_4003 >Meso_4006(znuA2) Score=5.6 Pos=-105 [Mesorhizobium sp. BNC1] CAAGTGTAATGTCATAACGTTTA >Meso_4005(znuC2) Score=5.5 Pos=-77 [Mesorhizobium sp. BNC1] TAAACGTTATGACATTACACTTG # TF - NnrR: Meso_2246, Meso_4277 >Meso_4284 Score=5.6 Pos=-142 [Mesorhizobium sp. BNC1] CTTTGCGCTAGCGCAAAC >Meso_4273(nirK) Score=4.2 Pos=-234 [Mesorhizobium sp. BNC1] CTTTGCGCGACGGGAACT >Meso_4273(nirK) Score=5.5 Pos=-86 [Mesorhizobium sp. BNC1] GTTTGCGCCAGCGCAAAG >Meso_2243(nirK) Score=4.9 Pos=-175 [Mesorhizobium sp. BNC1] CTTTGATCCAGCGCAACG >Meso_2243(nirK) Score=5.1 Pos=-82 [Mesorhizobium sp. BNC1] ATTTGCGCCAGAGCAAAG >Meso_2245(azu1) Score=5.2 Pos=-81 [Mesorhizobium sp. BNC1] CTTTGCGCGAGCGCAAAT >Meso_4276(azu1) Score=4.9 Pos=-86 [Mesorhizobium sp. BNC1] GTTTGCGTTGCAGCAAAG >Meso_4290 Score=5.4 Pos=-229 [Mesorhizobium sp. BNC1] GTTTGCGCTGGCGCAAAC >Meso_4294 Score=4.8 Pos=-70 [Mesorhizobium sp. BNC1] CTTTGCGGAAGTGCAAAG >Meso_4293(ubiD) Score=4.8 Pos=-65 [Mesorhizobium sp. BNC1] CTTTGCACTTCCGCAAAG >Meso_4277(nnrR) Score=4.9 Pos=-143 [Mesorhizobium sp. BNC1] CTTTGCTGCAACGCAAAC >Meso_2246(nnrR) Score=5.2 Pos=-55 [Mesorhizobium sp. BNC1] ATTTGCGCTCGCGCAAAG >Meso_4289(nnrS2) Score=5.4 Pos=-83 [Mesorhizobium sp. BNC1] GTTTGCGCCAGCGCAAAC >Meso_2247(PF08984) Score=5.1 Pos=-74 [Mesorhizobium sp. BNC1] CTTTGCGCAAGCACAACG # TF - HutC: Meso_2976, Meso_2988 >Meso_2987(hutF) Score=5.6 Pos=-84 [Mesorhizobium sp. BNC1] TACATGTATATACATAAT >Meso_2986(hutI) Score=5.6 Pos=-45 [Mesorhizobium sp. BNC1] ATTATGTATATACATGTA >Meso_2976(hutC) Score=4.8 Pos=-169 [Mesorhizobium sp. BNC1] AATTAGTATAGACATAAT # TF - HypR: Meso_2569 >Meso_2568(hypD) Score=4.6 Pos=-71 [Mesorhizobium sp. BNC1] TTGTGTCGACAAAC >Meso_2569(hypR) Score=3.4 Pos=-143 [Mesorhizobium sp. BNC1] ACGTGTTTACAATC # TF - RirA: Meso_1445 >Meso_0338(fhuA2) Score=4.9 Pos=-107 [Mesorhizobium sp. BNC1] GTTGACATTGATAATCATG >Meso_1440(hmuR) Score=5 Pos=-144 [Mesorhizobium sp. BNC1] CTTGACATCAATAATCAAC >Meso_1441(hmuP) Score=5 Pos=-91 [Mesorhizobium sp. BNC1] GTTGATTATTGATGTCAAG >Meso_1441(hmuP) Score=3.8 Pos=-129 [Mesorhizobium sp. BNC1] GTTGAGTAAATCTATCCGG >Meso_4047(bfd) Score=4.8 Pos=-232 [Mesorhizobium sp. BNC1] CATGACCTTGAAAGTCAAG >Meso_0170(fbpA) Score=4.3 Pos=-155 [Mesorhizobium sp. BNC1] CTTGACTACTATAGTTTAG # TF - Irr: Meso_3940 >Meso_0170(fbpA) Score=6.9 Pos=-143 [Mesorhizobium sp. BNC1] AGTTTAGAATAATTCTAAACT >Meso_4072(mbfA) Score=6.4 Pos=-37 [Mesorhizobium sp. BNC1] AGTTTAGAATTATTCTAATCA >Meso_1782(sufS2) Score=6.5 Pos=-131 [Mesorhizobium sp. BNC1] AGTTTAGAACTGTTCAAAACT >Meso_4037(fssA) Score=6 Pos=-44 [Mesorhizobium sp. BNC1] ATTTTAGAATTGTTCCAAAAA # TF - GlcC: Meso_0366 >Meso_0366(glcC) Score=4.1 Pos=-58 [Mesorhizobium sp. BNC1] CATTGGACAAATAAGTTGACCAGTT >Meso_0364(glcD) Score=4.7 Pos=-36 [Mesorhizobium sp. BNC1] AACTGGTAAATAGATTAGACCAGTG >Meso_0365(mlr6914) Score=4.2 Pos=-119 [Mesorhizobium sp. BNC1] AACTGGTCAACTTATTTGTCCAATG # TF - NtrC: Meso_1618 >Meso_1450(narK) Score=4.2 Pos=-325 [Mesorhizobium sp. BNC1] TGCCTAAGAAATAAACA >Meso_3237(glnK) Score=4.7 Pos=-203 [Mesorhizobium sp. BNC1] TGCACATTTTTTGTTCA # TF - Mur: Meso_3947 >Meso_4120(mntH) Score=5.2 Pos=-38 [Mesorhizobium sp. BNC1] AATGCAAATAAGTCGCAAC >Meso_2853(sitA) Score=5.8 Pos=-115 [Mesorhizobium sp. BNC1] GTTGCAAATGGTTTGCAAT # TF - LexA: Meso_1642 >Meso_3265(imuA) Score=1.2 Pos=-30 [Mesorhizobium sp. BNC1] GAACATAACAGGAAC >Meso_1396(uvrA) Score=5.2 Pos=-175 [Mesorhizobium sp. BNC1] GTTCGTTCTTTGTTC >Meso_0704(PF04055) Score=5.7 Pos=-77 [Mesorhizobium sp. BNC1] GTTCTTGATTTGTTC >Meso_3583(yifB) Score=4.9 Pos=-77 [Mesorhizobium sp. BNC1] GTTCTTGATCTGATC >Meso_1642(lexA) Score=4.9 Pos=-38 [Mesorhizobium sp. BNC1] GTTCTGGGTTTGTTT >Meso_1397(ssb) Score=0.9 Pos=-171 [Mesorhizobium sp. BNC1] GAACAAAAAAGGAAC >Meso_1015(parE) Score=0.7 Pos=-88 [Mesorhizobium sp. BNC1] GAACGGAACCGGAAC >Meso_1988(uvrD) Score=0.4 Pos=-54 [Mesorhizobium sp. BNC1] GTACAAAAAGAAAAC >Meso_0418(rmuC) Score=5 Pos=-51 [Mesorhizobium sp. BNC1] GTTCACGATTTGATC >Meso_3376(mgpS) Score=0.4 Pos=-175 [Mesorhizobium sp. BNC1] GAACAAAAACAGAAT >Meso_3807(imuA) Score=0.4 Pos=-52 [Mesorhizobium sp. BNC1] GAACAAATAGAGAAC >Meso_1263(recA) Score=0.9 Pos=-73 [Mesorhizobium sp. BNC1] GAACAAAACGGGTAC >Meso_1263(recA) Score=0.6 Pos=-140 [Mesorhizobium sp. BNC1] AAACAAAAAACGAAC >Meso_1686(xthA) Score=4.5 Pos=-17 [Mesorhizobium sp. BNC1] GTTCTGGATTCGTGC >Meso_2118(greA) Score=4.3 Pos=-58 [Mesorhizobium sp. BNC1] GTTTTCTTTTTGTGT >Meso_1344(dinP) Score=5.3 Pos=-27 [Mesorhizobium sp. BNC1] GTTCTTCTTATGTTC # TF - LiuR: Meso_0024, Meso_1259 >Meso_0723(acdH2) Score=5.9 Pos=-93 [Mesorhizobium sp. BNC1] TTTGACCTTTACGTAAGC >Meso_0023(acdH) Score=5.2 Pos=-77 [Mesorhizobium sp. BNC1] TTTGACGTTTACGCGCAC >Meso_3395(mdh) Score=4.6 Pos=-182 [Mesorhizobium sp. BNC1] GCTTACCCTTACGTAAAT >Meso_1259(liuR1) Score=5.2 Pos=-63 [Mesorhizobium sp. BNC1] ATTGACTTTTACGTAATC # TF - XylR: Meso_3115 >Meso_3114(xylF) Score=5.8 Pos=-217 [Mesorhizobium sp. BNC1] CTTTTTTCGAGGCTCGAAAAAAT >Meso_3115(xylR) Score=5.8 Pos=-44 [Mesorhizobium sp. BNC1] ATTTTTTCGAGCCTCGAAAAAAG >Meso_2819(xylB) Score=5.7 Pos=-72 [Mesorhizobium sp. BNC1] TTTGTTTCGAGTCTCGAAATAAT # TF - RutR: Meso_2041 >Meso_3652(pntA) Score=5.3 Pos=-18 [Mesorhizobium sp. BNC1] TGTTGACCAAAAGATAAAAT >Meso_2057(pydX) Score=5.6 Pos=-64 [Mesorhizobium sp. BNC1] ATTTGACTGATTGATAAAAA >Meso_2041(rutR) Score=5.2 Pos=-130 [Mesorhizobium sp. BNC1] TTTTGACCGTTTGGACAATC >Meso_2042(praX) Score=4.9 Pos=-88 [Mesorhizobium sp. BNC1] GATTGTCCAAACGGTCAAAA # TF - EutR: Meso_1872 >Meso_1871(eutA) Score=5.4 Pos=-89 [Mesorhizobium sp. BNC1] GGTGAAGAGAATTTTTCAAA >Meso_1872(eutR) Score=4.5 Pos=-123 [Mesorhizobium sp. BNC1] TTTGAAATTAATCATTCAGA >Meso_1871(eutA) Score=4.5 Pos=-47 [Mesorhizobium sp. BNC1] TCTGAATGATTAATTTCAAA >Meso_1872(eutR) Score=5.4 Pos=-81 [Mesorhizobium sp. BNC1] TTTGAAAAATTCTCTTCACC # RNA - Cobalamin >Meso_2703(nrdA) Score=134.1 Pos=-308 [Mesorhizobium sp. BNC1] ACTAAATATAGCCCATCACGGTGCTGTCGAGTCGTTCGGGTCGAGAGCTTAAGAGGGAAGCCGGTGTGAGGCCGGCGCTGCCCCCGCAACTGTAAGCAGCGAGCTTGTGTCGCGTATTGCCACTGGTGCTCCTAGAGCGCTGGGAAGGCCTGACAGAAGCGATGACCTGCAAGCCAGGAGACCTGCCGTGATGAGCATTGAACGT >Meso_2701 Score=132.9 Pos=-348 [Mesorhizobium sp. BNC1] GCAAATCTGCACACGTCGTGGTCCCCGGCGTCTTTCAGCGCCGGGGCTAAGAGGGAATTCGGTGCGCCCGTCAGCGCTATTGCGCTTTCCGAAAGCTGGTTTTGGTTTTCGGGGTTGATGTATCGGGTAATGCCGAAGCTGCCCCCGCAACTGTGAGCGGCGAGCTCTTCTCCAACATGCCACTGGAGACACCCGGGAAGGCGGAGAGAGGCTGTGACCCGCGAGCCAGGAGACCTGCCATGACGAGAACGTCCACG >Meso_2063(btuB1) Score=116 Pos=-318 [Mesorhizobium sp. BNC1] GTCTCGGCCGTGCCTGAGGTGCCCCGTCCGCAAACGGGGTTAAAAGGGAATATGGAAGGGCATTTTCCGCCCGAGCCATAGCTGCTCCCGCAACTGTCAGCGCTGAGGCTTCCTCAACATGCCACTGGGCCCTTTCGGCCTGGGAAGGCGAGGACGCCGTCGAAGCGCAAGCCAGGAAACCTGCCTTGGGTCGTCACCGTCCGGA # RNA - mini-ykkC >Meso_0982(ykkc) Score=34 Pos=-66 [Mesorhizobium sp. BNC1] TGCAGGGACGGCCTTGCTTTCTTCTATCCGGATGAGGACGGCCTCATC # RNA - TPP >Meso_3259(thiB) Score=70.4 Pos=-136 [Mesorhizobium sp. BNC1] TCGCTCTAACGGGGTGCCGTCGATTGACGGCTGAGAGGCAAAGGCCAACCCGCGGAACCTGATCCGGCTCATACCGGCGGAGGGATTAGACGCTGAGATAAAGC >Meso_2561 Score=78.9 Pos=-222 [Mesorhizobium sp. BNC1] ACCATCACCAGGGGGGCCCGGACAACGGGCTGAGATACCGCTGGCTTCAAGCAGCGCGGTGACCCTTTGAACCTGATCCAGTTCATACTGGCGTAGGGATGGTGCGACGGCTTTCCGGG # RNA - serC >Meso_3162(serC) Score=59.1 Pos=-56 [Mesorhizobium sp. BNC1] GCAGCGGGCTACCCCTCCCCACCGAGGGGCGAGCTATCTGGAAGGATAGGAACA # RNA - speF >Meso_2715(speF) Score=257 Pos=-426 [Mesorhizobium sp. BNC1] TTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGGGCCTCGAAATGGCGAGGAAACCGGTACGGTACCTGGACCTAACCGCTCCAGTCGATCTTACGGCCAACCGAAGATCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTGTCTGCCGGTTGTCCAAAGACCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGCAGTGCGGAGGGACATCCCATCCAAAGCTGAGGCAGACAAAGCGAGCCTTCGCCTTGCGGCGGAAGCTCATCGCAATGCGCAAGACGCGTCAACGGTCCGGT # RNA - yybP-ykoY >Meso_4106(COG1971) Score=34.8 Pos=-311 [Mesorhizobium sp. BNC1] CTCCCGGCCAATCAGGGAGTAGTCACCGCGCCCGCGCGGGACCGTGTCAACAGGCTTGTGCACATGCGCATGGCGCGGTCAGCCGATTCAACGGCCCGACAAGACTGTGGCGCCACTGCT # RNA - Glycine >Meso_1018(gcvT) Score=48.7 Pos=-149 [Mesorhizobium sp. BNC1] GGTTAGACACTCTGGAAAGTCGGGGCTTTTGCCCCGCGCCGAAGGTGTAAGCGTGGCCGACAGGGTTCCGGCGCGCGAGTCTCTCAGGCTTCAGACAGAGGGGCACGG >Meso_1018(gcvT) Score=53 Pos=-232 [Mesorhizobium sp. BNC1] CTGCCCGTCCGTGGGAGAGAGCAGCCCGGCTGCCGCCGAAGGGGAAATCGCCCGAAATCTCTCAGGCAAAAGAACCGCGAATG >Meso_4248 Score=54.8 Pos=-242 [Mesorhizobium sp. BNC1] AACTGGTTGCGGGAGAGAGCAGCGCACGGCTGCCGCCGAAGGGGAATACGCCTAAAATCTCTCAGGCAAAAGAACCGTAAGCAGG >Meso_4248 Score=45.5 Pos=-158 [Mesorhizobium sp. BNC1] GGCGACACTCTGGAAAGACGGGGCCTGTCAAAGATCCCGCGCCGAAGGTGTAAGTGCTATCGGAGCCCTATCCGGCAGCGCGAGTCTCTCAGGCTTCAGACAGAGGGGCACGGAA # RNA - SAM_alpha >Meso_3083(metA) Score=77.8 Pos=-132 [Mesorhizobium sp. BNC1] CAGGCGAACCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTAAAAGAAGTCGCTAAAAGGCCGTGGATACCAAGTC >Meso_0098(metY) Score=81.8 Pos=-118 [Mesorhizobium sp. BNC1] TTTATCCCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTTAAAGAAGTCGCTAAAAAGGCCGTGCTCGAAGCTCGAA # RNA - Trp_leader >Meso_2199(trpEG) Score=16.1 Pos=-138 [Mesorhizobium sp. BNC1] AAAGCTTTGGTGGTGGGCCCGCTAACGAGCGGCCGGCGCTAGCATGAGCGTTTGAACTTCGACGATGGCCGCAGGTGAAAACCGGGCGGCCATTTTAGT # RNA - ybhL >Meso_3353(ybhL) Score=27.3 Pos=-77 [Mesorhizobium sp. BNC1] ACGCATGCTGGACTCCCGCCAGCGGCGAGCGGCGTTGTGCCGACACCCGACGGGAGAGTAGC # TF - AglR: Meso_2854 >Meso_2855(aglE) Score=6.2 Pos=-105 [Mesorhizobium sp. BNC1] TTCTCAAAGCGCTTTGAGCT >Meso_2854(aglR) Score=6.2 Pos=-127 [Mesorhizobium sp. BNC1] AGCTCAAAGCGCTTTGAGAA # TF - PckR: Meso_2846 >Meso_3502(pckA) Score=4.5 Pos=-162 [Mesorhizobium sp. BNC1] GCGTTTAAACGATTTAGTGA >Meso_3436(fba) Score=4.8 Pos=-86 [Mesorhizobium sp. BNC1] CATTTCAATCGATTAGGGAG >Meso_3502(pckA) Score=5.5 Pos=-132 [Mesorhizobium sp. BNC1] TTTTTAAATCGATTAAAGAA >Meso_0159(zwf) Score=5.2 Pos=-53 [Mesorhizobium sp. BNC1] TTATTAAATCGATTAGACTA >Meso_3395(mdh) Score=5 Pos=-158 [Mesorhizobium sp. BNC1] CCATCTAAACGATTGAAAAA >Meso_3595(mgsA) Score=4.8 Pos=-40 [Mesorhizobium sp. BNC1] AGCTTCAATCGATTTAGGAG >Meso_3246(sdhC) Score=4.7 Pos=-157 [Mesorhizobium sp. BNC1] AACTTCAATCGATTCAGTCG >Meso_0989(glpX) Score=5 Pos=-129 [Mesorhizobium sp. BNC1] TTATTCAATCGATTCATATT # TF - HrcA: Meso_4017 >Meso_0358(groS) Score=7.2 Pos=-94 [Mesorhizobium sp. BNC1] TTAGCACTCTCCTACAGCGAGTGCTAA >Meso_3096(groS) Score=6.9 Pos=-167 [Mesorhizobium sp. BNC1] TTGGCACTCTCAATAGGTGAGTGCTAA # TF - MntR: Meso_4423 >Meso_4423(mntR) Score=5.1 Pos=-46 [Mesorhizobium sp. BNC1] TCCATAGCCGAGGCTATAAT >Meso_4423(mntR) Score=5.8 Pos=-109 [Mesorhizobium sp. BNC1] ATTATAGCAAATGCTATTTC >Meso_4422(COG2132) Score=5.8 Pos=-73 [Mesorhizobium sp. BNC1] GAAATAGCATTTGCTATAAT >Meso_4422(COG2132) Score=5.1 Pos=-136 [Mesorhizobium sp. BNC1] ATTATAGCCTCGGCTATGGA # TF - CueR: Meso_4039, Meso_3892 >Meso_2667(copA) Score=5.5 Pos=-49 [Mesorhizobium sp. BNC1] ACCTTCCAGTAACTGGAAGGA >Meso_3894(copZ) Score=5.3 Pos=-35 [Mesorhizobium sp. BNC1] ACCTTCCAACGGTGGGAAGCC >Meso_3893(copA) Score=5.4 Pos=-66 [Mesorhizobium sp. BNC1] ACCTTCCCATCGTTGGAAGCC >Meso_3893(copA) Score=5.3 Pos=-115 [Mesorhizobium sp. BNC1] GGCTTCCCACCGTTGGAAGGT # TF - CadR-PbrR: Meso_4426, Meso_4119, Meso_2848, Meso_4217 >Meso_4426(cadR2) Score=5.1 Pos=-34 [Mesorhizobium sp. BNC1] ATGCTTTAGTCGCCAGAGGAT >Meso_4216(PF00501) Score=4.4 Pos=-64 [Mesorhizobium sp. BNC1] ATTCTGTAGTGGCCACAGGAA >Meso_4216(PF00501) Score=5 Pos=-280 [Mesorhizobium sp. BNC1] ATTCTTTAGTGGCTACAGAAT >Meso_2849(cadA) Score=6.2 Pos=-57 [Mesorhizobium sp. BNC1] CTCCTATAGTCACTAGAGGAA >Meso_4129(cadA2) Score=5.3 Pos=-57 [Mesorhizobium sp. BNC1] ACCCTCTAGCTGCTATAGGTC # TF - SMb20014: Meso_0262 >Meso_0266(SMc20018) Score=6.1 Pos=-37 [Mesorhizobium sp. BNC1] AATTGAAATCGATTTCATCG # TF - SMb20039: Meso_0253 >Meso_0254(COG697) Score=12.3 Pos=-92 [Mesorhizobium sp. BNC1] TACTGTACTGC-(7)-AGAGAACAGTT-(6)-AATTGTACCGC # TF - PdxR: Meso_4362 >Meso_4362(PdxR) Score=8.3 Pos=-70 [Mesorhizobium sp. BNC1] ACATGCCTTG-(13)-CAATGGCCTG-(6)-CCTGCCAATT # TF - FnrN/FixK/AadR: Meso_2220 >Meso_2243(nirK) Score=4.7 Pos=-176 [Mesorhizobium sp. BNC1] ACTTTGATCCAGCGCAACGT >Meso_2243(nirK) Score=4.3 Pos=-83 [Mesorhizobium sp. BNC1] TATTTGCGCCAGAGCAAAGA >Meso_4273(nirK) Score=4 Pos=-87 [Mesorhizobium sp. BNC1] CGTTTGCGCCAGCGCAAAGA >Meso_2250(ccoN) Score=5.1 Pos=-90 [Mesorhizobium sp. BNC1] GATTTGATCCAGAGCAAAGT >Meso_1022(nuoA) Score=4.1 Pos=-136 [Mesorhizobium sp. BNC1] GGTTTGACTTGCGTCACCGA >Meso_2247 Score=4.6 Pos=-166 [Mesorhizobium sp. BNC1] ACATTGTCCTGAATCAAATC >Meso_2264(osmY) Score=4.7 Pos=-131 [Mesorhizobium sp. BNC1] GCTTTGATGAGCATCAACAT >Meso_2264(osmY) Score=4.8 Pos=-94 [Mesorhizobium sp. BNC1] GCGTTGACGCCGATCAACGC >Meso_2276(hspC2) Score=4.7 Pos=-256 [Mesorhizobium sp. BNC1] AAGTTGACGCACGTCAATGC # TF - FixJ: Meso_2223 >Meso_2220(fixK) Score=5.2 Pos=-86 [Mesorhizobium sp. BNC1] CTACGTAGTTTCCCTTAG