Regulon of LiuR in Mesorhizobium sp. BNC1
| Regulator type: | Transcription factor |
| TF locus tag: | Meso_0024, Meso_1259 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhizobiales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -93
Score: 5.9 Sequence: TTTGACCTTTACGTAAGC
Locus tag: Meso_0723
Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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acdH2
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -182
Score: 4.6 Sequence: GCTTACCCTTACGTAAAT
Locus tag: Meso_3395
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: Meso_3396
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Meso_3397
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: Meso_3398
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Meso_3399
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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Position: -77
Score: 5.2 Sequence: TTTGACGTTTACGCGCAC
Locus tag: Meso_0023
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Meso_0022
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Meso_0021
Name: acdB Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Meso_0020
Name: null Funciton: Predicted thioesterase |
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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acdB
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Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Predicted thioesterase
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Position: -63
Score: 5.2 Sequence: ATTGACTTTTACGTAATC
Locus tag: Meso_1259
Name: liuR1 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR1
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |