Regulog MetR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 7 | 6 |
| Shewanella putrefaciens CN-32 | 7 | 6 |
| Shewanella sp W3-18-1 | 7 | 6 |
| Shewanella sp ANA-3 | 7 | 6 |
| Shewanella sp MR-4 | 7 | 6 |
| Shewanella sp MR-7 | 7 | 6 |
| Shewanella baltica OS155 | 7 | 6 |
| Shewanella denitrificans OS217 | 6 | 5 |
| Shewanella frigidimarina NCIMB 400 | 4 | 3 |
| Shewanella amazonensis SB2B | 5 | 4 |
| Shewanella loihica PV-4 | 6 | 5 |
| Shewanella pealeana ATCC 700345 | 5 | 4 |
| Shewanella halifaxensis HAW-EB4 | 4 | 3 |
| Shewanella piezotolerans WP3 | 4 | 3 |
| Shewanella sediminis HAW-EB3 | 5 | 4 |
| Shewanella woodyi ATCC 51908 | 2 | 2 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| ilvI |
*
Shewanella oneidensis MR-1 Site: position = -203 score = 3.93567 sequence = TTGAAATGTGTTCTT Site: position = -243 score = 4.54669 sequence = ATGAAATTGTCTCAA Gene: SO2279: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella putrefaciens CN-32 Site: position = -243 score = 4.38581 sequence = TTGAAAATGTTTCAA Gene: Sputcn32_2138: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella sp W3-18-1 Site: position = -243 score = 4.38581 sequence = TTGAAAATGTTTCAA Gene: Sputw3181_1873: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella sp ANA-3 Site: position = -203 score = 3.93567 sequence = TTGAAATGTGTTCTT Site: position = -243 score = 4.69933 sequence = ATGAAATTGTTTCAA Gene: Shewana3_2269: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella sp MR-4 Site: position = -204 score = 4.04276 sequence = TTGAAATGTATTCTT Site: position = -244 score = 4.69933 sequence = ATGAAATTGTTTCAA Gene: Shewmr4_1750: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella sp MR-7 Site: position = -203 score = 3.93567 sequence = TTGAAATGTGTTCTT Site: position = -243 score = 4.69933 sequence = ATGAAATTGTTTCAA Gene: Shewmr7_1830: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella baltica OS155 Site: position = -120 score = 4.05249 sequence = ACGAAGTCAGTTCAG Site: position = -245 score = 4.47247 sequence = GTGAAATTGTTTCAA Gene: Sbal_2386: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella denitrificans OS217 Site: position = -91 score = 4.2499 sequence = TTGAAGTACCTTCAA Site: position = -245 score = 4.4646 sequence = ATGAATTTTACTCAC Gene: Sden_2122: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -236 score = 4.87153 sequence = ATGAAATGATTTCAA Gene: Sfri_1628: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella amazonensis SB2B Site: position = -245 score = 3.72663 sequence = TTGAATTTTCTTTAA Site: position = -341 score = 3.37922 sequence = CTGAAAGCGATTTAT Gene: Sama_2018: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella loihica PV-4 Site: position = -221 score = 4.15863 sequence = GTGAGTTTTGCTCAA Gene: Shew_1776: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella pealeana ATCC 700345 Site: position = -243 score = 4.59679 sequence = ATGAATTTTCTTCAT Gene: Spea_1911: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -244 score = 4.32237 sequence = ATGAATGTTCTTCAT Gene: Shal_2387: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella piezotolerans WP3 Site: position = -242 score = 4.23057 sequence = TTGAAAATTCTTCAT Gene: swp_2842: Acetolactate synthase large subunit (EC 2.2.1.6) |
*
Shewanella sediminis HAW-EB3 Site: position = -247 score = 4.56454 sequence = GTGAATTTTTTTCAT Gene: Ssed_2666: Acetolactate synthase large subunit (EC 2.2.1.6) |
Gene: Swoo_1955: Acetolactate synthase large subunit (EC 2.2.1.6) |
Acetolactate synthase large subunit (EC 2.2.1.6) |
| ilvH |
Gene: SO2278: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sputcn32_2139: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sputw3181_1872: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Shewana3_2270: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Shewmr4_1749: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Shewmr7_1829: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sbal_2387: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sden_2123: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sfri_1627: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Sama_2019: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Shew_1775: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Spea_1910: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Shal_2388: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: swp_2843: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Ssed_2667: Acetolactate synthase small subunit (EC 2.2.1.6) |
Gene: Swoo_1954: Acetolactate synthase small subunit (EC 2.2.1.6) |
Acetolactate synthase small subunit (EC 2.2.1.6) |
| CRON 2. | |||||||||||||||||
| metC |
*
Shewanella oneidensis MR-1 Site: position = -110 score = 4.25215 sequence = TTGAGGCAAACTCAT Gene: SO2191: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella putrefaciens CN-32 Site: position = -141 score = 4.43859 sequence = ATGAGCCAAACTCAT Gene: Sputcn32_1736: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella sp W3-18-1 Site: position = -141 score = 4.43859 sequence = ATGAGCCAAACTCAT Gene: Sputw3181_2289: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella sp ANA-3 Site: position = -109 score = 4.25215 sequence = TTGAGGCAAACTCAT Gene: Shewana3_2414: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella sp MR-4 Site: position = -109 score = 4.25215 sequence = TTGAGGCAAACTCAT Gene: Shewmr4_2204: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella sp MR-7 Site: position = -109 score = 4.25215 sequence = TTGAGGCAAACTCAT Gene: Shewmr7_2281: Cystathionine beta-lyase (EC 4.4.1.8) |
*
Shewanella baltica OS155 Site: position = -148 score = 4.54568 sequence = ATGAGTCAAACTCAT Gene: Sbal_1838: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Sden_2313: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Sfri_1621: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Sama_2008: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Shew_1789: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Spea_2520: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Shal_1732: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: swp_3096: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Ssed_2496: Cystathionine beta-lyase (EC 4.4.1.8) |
Gene: Swoo_2120: Cystathionine beta-lyase (EC 4.4.1.8) |
Cystathionine beta-lyase (EC 4.4.1.8) |
| CRON 3. | |||||||||||||||||
| metE |
*
Shewanella oneidensis MR-1 Site: position = -166 score = 4.30796 sequence = TTGAAATCAATTCGG Site: position = -188 score = 4.35037 sequence = GTGAATTTCGCTCAT Gene: SO0818: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella putrefaciens CN-32 Site: position = -189 score = 4.35037 sequence = GTGAATTTCGCTCAT Site: position = -167 score = 4.30796 sequence = TTGAAATCAATTCGG Gene: Sputcn32_3172: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella sp W3-18-1 Site: position = -189 score = 4.45747 sequence = GTGAATTTCACTCAT Site: position = -167 score = 4.30796 sequence = TTGAAATCAATTCGG Gene: Sputw3181_0771: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella sp ANA-3 Site: position = -189 score = 4.35037 sequence = GTGAATTTCGCTCAT Site: position = -167 score = 4.30796 sequence = TTGAAATCAATTCGG Gene: Shewana3_3469: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella sp MR-4 Site: position = -166 score = 4.30796 sequence = TTGAAATCAATTCGG Site: position = -188 score = 4.35037 sequence = GTGAATTTCGCTCAT Gene: Shewmr4_3299: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella sp MR-7 Site: position = -189 score = 4.35037 sequence = GTGAATTTCGCTCAT Site: position = -167 score = 4.30796 sequence = TTGAAATCAATTCGG Gene: Shewmr7_0654: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella baltica OS155 Site: position = -167 score = 4.30796 sequence = TTGAAATCAATTCGG Site: position = -189 score = 4.29767 sequence = GTGAAATTCGCTCAT Gene: Sbal_0667: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella denitrificans OS217 Site: position = -146 score = 4.53168 sequence = ATGAGTTTCACTCAT Site: position = -124 score = 4.0853 sequence = CTGAATTTATTTCCA Gene: Sden_0732: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
*
Shewanella amazonensis SB2B Site: position = -153 score = 4.4897 sequence = ATGAAGTTTGTTCAT Site: position = -131 score = 4.08435 sequence = GTGAACACAATTCGT Gene: Sama_2627: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella loihica PV-4 Site: position = -167 score = 4.3598 sequence = GTGAAATCAATTCGA Site: position = -189 score = 4.59123 sequence = ATGAATTTGGCTCAT Gene: Shew_2986: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Shewanella pealeana ATCC 700345 Site: position = -166 score = 4.52452 sequence = ATGAAATTCGCTCAT Site: position = -144 score = 4.28 sequence = TTGAATTCGTTTCGA Gene: Spea_3202: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
|
*
Shewanella sediminis HAW-EB3 Site: position = -191 score = 4.737 sequence = ATGAATTTTGTTCAT Site: position = -169 score = 4.58665 sequence = TTGAAATCAATTCGT Gene: Ssed_3555: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 4. | |||||||||||||||||
| luxS |
*
Shewanella oneidensis MR-1 Site: position = -120 score = 4.76511 sequence = ATGAGATGATTTCAT Gene: SO1101: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella putrefaciens CN-32 Site: position = -278 score = 4.48645 sequence = TTGAGAGAATTTCAA Gene: Sputcn32_0938: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella sp W3-18-1 Site: position = -278 score = 4.48645 sequence = TTGAGAGAATTTCAA Gene: Sputw3181_3238: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella sp ANA-3 Site: position = -111 score = 4.53826 sequence = GTGAGATGATTTCAT Gene: Shewana3_0936: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella sp MR-4 Site: position = -111 score = 4.76511 sequence = ATGAGATGATTTCAT Gene: Shewmr4_0934: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella sp MR-7 Site: position = -111 score = 4.76511 sequence = ATGAGATGATTTCAT Gene: Shewmr7_0972: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella baltica OS155 Site: position = -121 score = 4.76511 sequence = ATGAGATGATTTCAT Gene: Sbal_0922: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella denitrificans OS217 Site: position = -101 score = 4.65694 sequence = TTGAAATCTATTCAT Gene: Sden_0981: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Sfri_0947: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Sama_2541: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
*
Shewanella loihica PV-4 Site: position = -153 score = 4.47147 sequence = TTGAGCTAAGTTCAC Gene: Shew_2882: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Spea_3104: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Shal_3188: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: swp_1166: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Ssed_3432: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
Gene: Swoo_3618: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS |
| CRON 5. | |||||||||||||||||
| mdeA |
Gene: SO1812: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sputcn32_1507: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sputw3181_2594: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shewana3_2643: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shewmr4_2477: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shewmr7_2545: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sbal_1622: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella denitrificans OS217 Site: position = -67 score = 5.05868 sequence = ATGAAATTAATTCAT Gene: Sden_2521: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sfri_1369: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sama_1242: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shew_2491: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Spea_2664: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shal_2751: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: swp_3243: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Ssed_1559: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Swoo_3095: Methionine gamma-lyase (EC 4.4.1.11) |
Methionine gamma-lyase (EC 4.4.1.11) |
| CRON 6. | |||||||||||||||||
| glyA |
*
Shewanella oneidensis MR-1 Site: position = -120 score = 4.25634 sequence = TTGAGGTGCATTCAA Gene: SO3471: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella putrefaciens CN-32 Site: position = -120 score = 4.4379 sequence = ATGAGCCAAGTTCAA Gene: Sputcn32_2780: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella sp W3-18-1 Site: position = -120 score = 4.4379 sequence = ATGAGCCAAGTTCAA Gene: Sputw3181_1232: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella sp ANA-3 Site: position = -120 score = 4.16325 sequence = TTGAGGCGAGTTCAA Gene: Shewana3_1094: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella sp MR-4 Site: position = -120 score = 4.16325 sequence = TTGAGGCGAGTTCAA Gene: Shewmr4_1094: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella sp MR-7 Site: position = -120 score = 4.16325 sequence = TTGAGGCGAGTTCAA Gene: Shewmr7_1160: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella baltica OS155 Site: position = -120 score = 4.4379 sequence = ATGAGCCAAGTTCAA Gene: Sbal_3162: Serine hydroxymethyltransferase (EC 2.1.2.1) |
Gene: Sden_1142: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -212 score = 3.7102 sequence = ATGTGCTGAACTCAA Gene: Sfri_1033: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella amazonensis SB2B Site: position = -120 score = 3.73724 sequence = ATGAAACACAGTCAT Gene: Sama_1014: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella loihica PV-4 Site: position = -122 score = 3.98567 sequence = ATGAACATTTCTCAG Gene: Shew_1185: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella pealeana ATCC 700345 Site: position = -119 score = 4.03362 sequence = ACGAAACTCACTCAT Gene: Spea_1160: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -119 score = 3.98091 sequence = ACGAAACTCTCTCAT Gene: Shal_1203: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella piezotolerans WP3 Site: position = -119 score = 4.0284 sequence = ATAAGTTTAACTCAT Gene: swp_1337: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella sediminis HAW-EB3 Site: position = -218 score = 4.41611 sequence = TTGAATTGTCTTCAA Site: position = -199 score = 4.05321 sequence = ATGAGTTTCCTTCGA Gene: Ssed_1271: Serine hydroxymethyltransferase (EC 2.1.2.1) |
*
Shewanella woodyi ATCC 51908 Site: position = -119 score = 4.09708 sequence = GTGAGTCATGTTCAT Gene: Swoo_1380: Serine hydroxymethyltransferase (EC 2.1.2.1) |
Serine hydroxymethyltransferase (EC 2.1.2.1) |
| CRON 7. | |||||||||||||||||
| metR |
*
Shewanella oneidensis MR-1 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.35037 sequence = ATGAGCGAAATTCAC Gene: SO0817: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella putrefaciens CN-32 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.35037 sequence = ATGAGCGAAATTCAC Gene: Sputcn32_3173: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella sp W3-18-1 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.45747 sequence = ATGAGTGAAATTCAC Gene: Sputw3181_0770: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella sp ANA-3 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.35037 sequence = ATGAGCGAAATTCAC Gene: Shewana3_3470: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella sp MR-4 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.35037 sequence = ATGAGCGAAATTCAC Gene: Shewmr4_3300: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella sp MR-7 Site: position = -26 score = 4.35037 sequence = ATGAGCGAAATTCAC Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Gene: Shewmr7_0653: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella baltica OS155 Site: position = -48 score = 4.30796 sequence = CCGAATTGATTTCAA Site: position = -26 score = 4.29767 sequence = ATGAGCGAATTTCAC Gene: Sbal_0666: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella denitrificans OS217 Site: position = -48 score = 4.0853 sequence = TGGAAATAAATTCAG Site: position = -26 score = 4.53168 sequence = ATGAGTGAAACTCAT Gene: Sden_0731: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -48 score = 4.58665 sequence = TCGAATTGATTTCAT Site: position = -26 score = 4.27771 sequence = TTGAGCAAGATTCAT Gene: Sfri_0826: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella amazonensis SB2B Site: position = -141 score = 4.3972 sequence = ATGAGCACATTTCAA Site: position = -48 score = 4.08435 sequence = ACGAATTGTGTTCAC Site: position = -26 score = 4.4897 sequence = ATGAACAAACTTCAT Gene: Sama_2628: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella loihica PV-4 Site: position = -26 score = 4.59123 sequence = ATGAGCCAAATTCAT Site: position = -48 score = 4.3598 sequence = TCGAATTGATTTCAC Site: position = -178 score = 4.63162 sequence = ATGAGAGAAATTCAT Gene: Shew_2987: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella pealeana ATCC 700345 Site: position = -154 score = 4.16546 sequence = ATGAGGAAAATTCAG Site: position = -48 score = 4.28 sequence = TCGAAACGAATTCAA Site: position = -26 score = 4.52452 sequence = ATGAGCGAATTTCAT Gene: Spea_3203: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -162 score = 4.30566 sequence = ATGAGCAAAATTCAG Site: position = -48 score = 4.28 sequence = TCGAAACGAATTCAA Gene: Shal_3283: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella piezotolerans WP3 Site: position = -26 score = 4.39145 sequence = ATGAGAAAACTTCAT Site: position = -48 score = 4.26383 sequence = TAGAAATGAATTCAA Site: position = -153 score = 4.5654 sequence = ATGAATAAAATTCAG Gene: swp_1138: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella sediminis HAW-EB3 Site: position = -190 score = 3.99059 sequence = GTGAGCAGAATTCAG Site: position = -59 score = 4.58665 sequence = ACGAATTGATTTCAA Site: position = -37 score = 4.737 sequence = ATGAACAAAATTCAT Gene: Ssed_3556: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Shewanella woodyi ATCC 51908 Site: position = -59 score = 3.78163 sequence = GGGAATAGATTTCAA Site: position = -192 score = 4.30566 sequence = ATGAGCAAAATTCAG Site: position = -37 score = 4.53168 sequence = ATGAGTGAAACTCAT Gene: Swoo_3732: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |