Regulon of MetR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_2628 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Regulog: | MetR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -141
Score: 4.4 Sequence: ATGAGCACATTTCAA
Position: -48
Score: 4.1 Sequence: ACGAATTGTGTTCAC
Position: -26
Score: 4.5 Sequence: ATGAACAAACTTCAT
Locus tag: Sama_2628
Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
|||
|
metR
|
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
|
||
|
Position: -120
Score: 3.7 Sequence: ATGAAACACAGTCAT
Locus tag: Sama_1014
Name: glyA Funciton: Serine hydroxymethyltransferase (EC 2.1.2.1) |
|||
|
glyA
|
Serine hydroxymethyltransferase (EC 2.1.2.1)
|
||
|
Position: -341
Score: 3.4 Sequence: CTGAAAGCGATTTAT
Position: -245
Score: 3.7 Sequence: TTGAATTTTCTTTAA
Locus tag: Sama_2018
Name: ilvI Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: Sama_2019
Name: ilvH Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) |
|||
|
ilvI
|
Acetolactate synthase large subunit (EC 2.2.1.6)
|
||
|
ilvH
|
Acetolactate synthase small subunit (EC 2.2.1.6)
|
||
|
Position: -153
Score: 4.5 Sequence: ATGAAGTTTGTTCAT
Position: -131
Score: 4.1 Sequence: GTGAACACAATTCGT
Locus tag: Sama_2627
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|||
|
metE
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |