Regulons of Oceanicola granulosus HTCC2516
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
AglR |
Alpha-glucoside; Maltose; Sucrose; Trehalose |
Alpha-glucosides utilization |
2 |
3 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
1 |
1 |
| TF |
CceR (GapR) |
6-phosphogluconate |
Central carbohydrate metabolism |
14 |
6 |
| TF |
Chvl |
|
|
1 |
1 |
| TF |
FnrN |
Oxygen |
Oxidative stress response; Nitrogen fixation |
4 |
1 |
| TF |
HrcA |
Heat shock |
Heat shock response |
1 |
1 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
3 |
2 |
| TF |
HypR |
4-hydroxyproline |
Proline and 4-hydrohyproline utilization |
5 |
4 |
| TF |
Irr |
Heme |
Iron homeostasis |
4 |
1 |
| TF |
IscR |
Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
Iron-sulfur cluster biogenesis; Iron homeostasis |
4 |
2 |
| TF |
Jann_1107 |
|
Sugar utilization |
1 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
10 |
9 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
2 |
2 |
| TF |
Mur |
Manganese ion, (Mn2+) |
Manganese homeostasis |
3 |
1 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
1 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
6 |
5 |
| TF |
OG2516_10476 |
|
Sugar utilization |
2 |
4 |
| TF |
RhaR |
Rhamnose |
Rhamnose utilization |
2 |
6 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
6 |
4 |
| TF |
SmoR |
Sorbitol |
Sorbitol utilization; Mannitol utilization |
3 |
2 |
| TF |
SoxR |
Paraquat |
Superoxide stress response |
2 |
2 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
2 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
7 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
2 |
2 |
| RNA |
SAM-SAH |
S-adenosylmethionine; S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
3 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
2 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
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