Regulon of RhaR in Oceanicola granulosus HTCC2516
| Regulator type: | Transcription factor |
| TF locus tag: | |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -150
Score: 6.4 Sequence: TCAATCA-(3)-TCGATCA
Position: -140
Score: 6.4 Sequence: TCGATCA-(3)-TCAATCA
Locus tag: OG2516_12151
Name: rhaEW Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: OG2516_12146
Name: rhaI Funciton: L-rhamnose isomerase (EC 5.3.1.14) |
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rhaEW
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
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rhaI
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L-rhamnose isomerase (EC 5.3.1.14)
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Position: -137
Score: 4.9 Sequence: TCGAGCG-(3)-TCGCTCA
Position: -116
Score: 5.5 Sequence: TCAATCA-(3)-TCGCTCA
Position: -74
Score: 6.7 Sequence: ATGATTG-(3)-ATGATCG
Position: -64
Score: 6.7 Sequence: ATGATCG-(3)-ATGATTG
Locus tag: OG2516_12156
Name: rhaR Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
Locus tag: OG2516_12161
Name: rhaF Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: OG2516_12166
Name: rhaG Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: OG2516_12171
Name: rhaH Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: OG2516_12176
Name: rhaJ Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: OG2516_12181
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: OG2516_12186
Name: rhaK Funciton: putative rhamnulokinase |
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rhaR
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Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
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rhaF
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L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
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rhaG
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L-rhamnose ABC transporter, duplicated ATP-binding component
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rhaH
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L-rhamnose ABC transporter, permease component 1
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rhaJ
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L-rhamnose ABC transporter, permease component 2
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rhaM
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L-rhamnose mutarotase
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rhaK
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putative rhamnulokinase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |