Regulog RhaR - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - DeoR
By effector - Rhamnose
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Oceanicola granulosus HTCC2516	9	2
Oceanicola batsensis HTCC2597
Jannaschia sp. CCS1
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654	10	2
Loktanella vestfoldensis SKA53
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter pomeroyi DSS-3
Silicibacter TM1040
Sulfitobacter sp. EE-36
Roseobacter sp. MED193
Oceanicaulis alexandrii HTCC2633
Hyphomonas neptunium ATCC 15444

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rhaEW	* Oceanicola granulosus HTCC2516 Site: position = -140 score = 6.3558 sequence = TCGATCA-(3)-TCAATCA Site: position = -150 score = 6.3558 sequence = TCAATCA-(3)-TCGATCA Gene: OG2516_12151: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	* Rhodobacterales bacterium HTCC2654 Site: position = -60 score = 6.91702 sequence = ATGATCG-(3)-ATGATCG Site: position = -50 score = 5.68569 sequence = ATGATCG-(3)-TTGGTTG Gene: RB2654_09469: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
lldD	Oceanicola granulosus HTCC2516	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	2 Rhodobacterales bacterium HTCC2654 Gene: RB2654_09474: putative L-lactate dehydrogenase Gene: RB2654_06182: putative L-lactate dehydrogenase	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	putative L-lactate dehydrogenase
rhaI	Oceanicola granulosus HTCC2516 Gene: OG2516_12146: L-rhamnose isomerase (EC 5.3.1.14)	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09479: L-rhamnose isomerase (EC 5.3.1.14)	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose isomerase (EC 5.3.1.14)

CRON 2.
rhaR	* Oceanicola granulosus HTCC2516 Site: position = -74 score = 6.65774 sequence = ATGATTG-(3)-ATGATCG Site: position = -64 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Site: position = -137 score = 4.94763 sequence = TCGAGCG-(3)-TCGCTCA Site: position = -116 score = 5.52735 sequence = TCAATCA-(3)-TCGCTCA Gene: OG2516_12156: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	* Rhodobacterales bacterium HTCC2654 Site: position = -114 score = 4.83012 sequence = TCAACCA-(3)-CCGATCA Site: position = -63 score = 5.37772 sequence = ATGAAAA-(3)-TTGATTG Site: position = -104 score = 6.10345 sequence = CCGATCA-(3)-ACGATCA Gene: RB2654_09464: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
rhaF	Oceanicola granulosus HTCC2516 Gene: OG2516_12161: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09459: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
rhaG	Oceanicola granulosus HTCC2516 Gene: OG2516_12166: L-rhamnose ABC transporter, duplicated ATP-binding component	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09454: L-rhamnose ABC transporter, duplicated ATP-binding component	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose ABC transporter, duplicated ATP-binding component
rhaH	Oceanicola granulosus HTCC2516 Gene: OG2516_12171: L-rhamnose ABC transporter, permease component 1	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09449: L-rhamnose ABC transporter, permease component 1	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose ABC transporter, permease component 1
rhaJ	Oceanicola granulosus HTCC2516 Gene: OG2516_12176: L-rhamnose ABC transporter, permease component 2	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09444: L-rhamnose ABC transporter, permease component 2	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose ABC transporter, permease component 2
rhaM	Oceanicola granulosus HTCC2516 Gene: OG2516_12181: L-rhamnose mutarotase	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09439: L-rhamnose mutarotase	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	L-rhamnose mutarotase
rhaK	Oceanicola granulosus HTCC2516 Gene: OG2516_12186: putative rhamnulokinase	Oceanicola batsensis HTCC2597	Jannaschia sp. CCS1	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_09434: putative rhamnulokinase	Loktanella vestfoldensis SKA53	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter pomeroyi DSS-3	Silicibacter TM1040	Sulfitobacter sp. EE-36	Roseobacter sp. MED193	Oceanicaulis alexandrii HTCC2633	Hyphomonas neptunium ATCC 15444	putative rhamnulokinase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaR - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --