Regulog RhaR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Phylum: | Proteobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Oceanicola granulosus HTCC2516 | 9 | 2 |
| Oceanicola batsensis HTCC2597 | ||
| Jannaschia sp. CCS1 | ||
| Paracoccus denitrificans PD1222 | ||
| Rhodobacter sphaeroides 2.4.1 | ||
| Rhodobacterales bacterium HTCC2654 | 10 | 2 |
| Loktanella vestfoldensis SKA53 | ||
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Silicibacter pomeroyi DSS-3 | ||
| Silicibacter TM1040 | ||
| Sulfitobacter sp. EE-36 | ||
| Roseobacter sp. MED193 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Hyphomonas neptunium ATCC 15444 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rhaEW |
*
Oceanicola granulosus HTCC2516 Site: position = -140 score = 6.3558 sequence = TCGATCA-(3)-TCAATCA Site: position = -150 score = 6.3558 sequence = TCAATCA-(3)-TCGATCA Gene: OG2516_12151: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
|
|
|
|
*
Rhodobacterales bacterium HTCC2654 Site: position = -60 score = 6.91702 sequence = ATGATCG-(3)-ATGATCG Site: position = -50 score = 5.68569 sequence = ATGATCG-(3)-TTGGTTG Gene: RB2654_09469: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
|
|
|
|
|
|
|
|
|
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) |
| lldD |
|
|
|
|
|
2
Rhodobacterales bacterium HTCC2654 Gene: RB2654_09474: putative L-lactate dehydrogenase Gene: RB2654_06182: putative L-lactate dehydrogenase |
|
|
|
|
|
|
|
|
|
putative L-lactate dehydrogenase |
| rhaI |
Gene: OG2516_12146: L-rhamnose isomerase (EC 5.3.1.14) |
|
|
|
|
Gene: RB2654_09479: L-rhamnose isomerase (EC 5.3.1.14) |
|
|
|
|
|
|
|
|
|
L-rhamnose isomerase (EC 5.3.1.14) |
| CRON 2. | ||||||||||||||||
| rhaR |
*
Oceanicola granulosus HTCC2516 Site: position = -74 score = 6.65774 sequence = ATGATTG-(3)-ATGATCG Site: position = -64 score = 6.65774 sequence = ATGATCG-(3)-ATGATTG Site: position = -137 score = 4.94763 sequence = TCGAGCG-(3)-TCGCTCA Site: position = -116 score = 5.52735 sequence = TCAATCA-(3)-TCGCTCA Gene: OG2516_12156: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein |
|
|
|
|
*
Rhodobacterales bacterium HTCC2654 Site: position = -114 score = 4.83012 sequence = TCAACCA-(3)-CCGATCA Site: position = -63 score = 5.37772 sequence = ATGAAAA-(3)-TTGATTG Site: position = -104 score = 6.10345 sequence = CCGATCA-(3)-ACGATCA Gene: RB2654_09464: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein |
|
|
|
|
|
|
|
|
|
Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein |
| rhaF |
Gene: OG2516_12161: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
|
|
|
|
Gene: RB2654_09459: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
|
|
|
|
|
|
|
|
|
L-rhamnose ABC transporter, periplasmic rhamnose-binding protein |
| rhaG |
Gene: OG2516_12166: L-rhamnose ABC transporter, duplicated ATP-binding component |
|
|
|
|
Gene: RB2654_09454: L-rhamnose ABC transporter, duplicated ATP-binding component |
|
|
|
|
|
|
|
|
|
L-rhamnose ABC transporter, duplicated ATP-binding component |
| rhaH |
Gene: OG2516_12171: L-rhamnose ABC transporter, permease component 1 |
|
|
|
|
Gene: RB2654_09449: L-rhamnose ABC transporter, permease component 1 |
|
|
|
|
|
|
|
|
|
L-rhamnose ABC transporter, permease component 1 |
| rhaJ |
Gene: OG2516_12176: L-rhamnose ABC transporter, permease component 2 |
|
|
|
|
Gene: RB2654_09444: L-rhamnose ABC transporter, permease component 2 |
|
|
|
|
|
|
|
|
|
L-rhamnose ABC transporter, permease component 2 |
| rhaM |
Gene: OG2516_12181: L-rhamnose mutarotase |
|
|
|
|
Gene: RB2654_09439: L-rhamnose mutarotase |
|
|
|
|
|
|
|
|
|
L-rhamnose mutarotase |
| rhaK |
Gene: OG2516_12186: putative rhamnulokinase |
|
|
|
|
Gene: RB2654_09434: putative rhamnulokinase |
|
|
|
|
|
|
|
|
|
putative rhamnulokinase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |