Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Anoxybacillus flavithermus WK1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 2 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 6
TF AseR Arsenite Arsenic resistance 1 1
TF BH1250 Sugar utilization 1 1
TF BirA Biotin Biotin biosynthesis 4 4
TF BkdR Branched-chain amino acid degradation 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 51 25
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 72 43
TF CsoR Copper ion, (Cu+) Copper resistance 1 1
TF CtsR Heat shock Heat shock response 5 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 7 6
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 4 5
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 5
TF FapR Malonyl-CoA Fatty acid biosynthesis 7 3
TF Fnr Oxygen Anaerobic metabolism 5 1
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 8 7
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 3 5
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF HisR Histidine Histidine biosynthesis 2 3
TF HrcA Heat shock Heat shock response 2 2
TF KojR Kojibiose Kojibiose utilization 2 2
TF LexA DNA damage SOS response 15 17
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 3 3
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 3
TF MhqR 2-Methylhydroquinone and catechol resistance 1 1
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 3 2
TF NiaR Niacin NAD biosynthesis 2 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 11 11
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 9 8
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 8 7
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 2
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 24 19
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF YhgD 1 1
TF YisR Metabolite transport 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 4 4
TF YrkD Multidrug resistance 9 10
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 3 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 3 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 6 5
RNA PyrR PyrR Pyrimidine metabolism 3 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 10 6
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 4 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 2 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 3 2
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 3 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ylbH 1 1
RNA yybP-ykoY 1 1
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