Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CodY in Anoxybacillus flavithermus WK1

Properties
Regulator type: Transcription factor
TF locus tag: Aflv_1745
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Regulog: CodY - Bacillales
Statistics of regulated genes:
- Genes 65
- Operons 38
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 445 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -140
Score: 4.9
Sequence: ATTTTTCTGACAATT
Locus tag: Aflv_1459
Name: gltO
Funciton: Proton/sodium-glutamate symport protein
Aflv_1459
gltO
Proton/sodium-glutamate symport protein
Position: -77
Score: 5.1
Sequence: AATTTTTTAAAAATT
Locus tag: Aflv_0462
Name: acsA
Funciton: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Aflv_0462
acsA
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Position: -117
Score: 4.6
Sequence: TATTTTCTGAATTTT
Position: -108
Score: 4.4
Sequence: AATTTTTTAATAAAT
Locus tag: Aflv_0983
Name: yqjP
Funciton: Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6)
Aflv_0983
yqjP
Zinc metallohydrolase, metallo-beta-lactamase family (EC 3.5.2.6)
Position: -122
Score: 4.7
Sequence: TATTTTTATAAAATT
Locus tag: Aflv_2792
Name: glnH
Funciton: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Locus tag: Aflv_2791
Name: glnP
Funciton: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Locus tag: Aflv_2790
Name: glnQ
Funciton: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Aflv_2792
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
Aflv_2791
glnP
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Aflv_2790
glnQ
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Position: -48
Score: 4.7
Sequence: AATTTTTTGAATTTT
Position: -26
Score: 4.5
Sequence: TATTTTTTTAATATT
Locus tag: Aflv_0356
Name: appD
Funciton: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Locus tag: Aflv_0357
Name: appF
Funciton: Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Locus tag: Aflv_0358
Name: appA
Funciton: Oligopeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
Locus tag: Aflv_0359
Name: appB
Funciton: Oligopeptide transport system permease protein (TC 3.A.1.5.2)
Locus tag: Aflv_0360
Name: appC
Funciton: Oligopeptide transport system permease protein (TC 3.A.1.5.2)
Aflv_0356
appD
Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Aflv_0357
appF
Oligopeptide transport ATP-binding protein (TC 3.A.1.5.1)
Aflv_0358
appA
Oligopeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
Aflv_0359
appB
Oligopeptide transport system permease protein (TC 3.A.1.5.2)
Aflv_0360
appC
Oligopeptide transport system permease protein (TC 3.A.1.5.2)
Position: -29
Score: 4.9
Sequence: AATTTTATGAAAATA
Locus tag: Aflv_2051
Name: azlC
Funciton: Branched-chain amino acid permease (azaleucine resistance)
Locus tag: Aflv_2052
Name: azlD
Funciton: Branched-chain amino acid transport protein
Aflv_2051
azlC
Branched-chain amino acid permease (azaleucine resistance)
Aflv_2052
azlD
Branched-chain amino acid transport protein
Position: -100
Score: 4.9
Sequence: AATTTTCAGAAAAAA
Locus tag: Aflv_1508
Name: glnR
Funciton: Transcriptional regulator of nitrogen excess response, MerR family
Locus tag: Aflv_1507
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Aflv_1508
glnR
Transcriptional regulator of nitrogen excess response, MerR family
Aflv_1507
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -142
Score: 4.6
Sequence: AATTTTCTAACATTT
Locus tag: Aflv_2134
Name: null
Funciton: Uncharacterized membrane protein
Aflv_2134
Uncharacterized membrane protein
Position: -68
Score: 4.4
Sequence: AATTTTTTGAATTTA
Locus tag: Aflv_1145
Name: yppF
Funciton: Hypothetical protein
Aflv_1145
yppF
Hypothetical protein
Position: -102
Score: 4.4
Sequence: AAAATACAGAAAATT
Locus tag: Aflv_1403
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Aflv_1403
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
Position: -56
Score: 4.8
Sequence: AAATTTCAGAAAATA
Locus tag: Aflv_0564
Name: lcfA
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Aflv_0564
lcfA
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -39
Score: 4.9
Sequence: AATTTTCAGAAAAAA
Locus tag: Aflv_1883
Name: ykzI
Funciton: Hypothetical protein
Locus tag: Aflv_1882
Name: suhB
Funciton: Inositol-1-monophosphatase (EC 3.1.3.25)
Aflv_1883
ykzI
Hypothetical protein
Aflv_1882
suhB
Inositol-1-monophosphatase (EC 3.1.3.25)
Position: -83
Score: 4.8
Sequence: AATTTTCGGAATATT
Locus tag: Aflv_2006
Name: kinE
Funciton: Sporulation kinase E
Aflv_2006
kinE
Sporulation kinase E
Position: -51
Score: 5.3
Sequence: AATTTTCTAAAAATT
Locus tag: Aflv_1464
Name: metA
Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
Aflv_1464
metA
Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -87
Score: 4.4
Sequence: ATTTATTAAAAAATT
Locus tag: Aflv_2290
Name: hpr
Funciton: Transcriptional repressor of sporulation and extracellular protein, MarR family
Aflv_2290
hpr
Transcriptional repressor of sporulation and extracellular protein, MarR family
Position: -88
Score: 4.7
Sequence: TTTTTTTAGAAAATT
Locus tag: Aflv_2414
Name: hom
Funciton: Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: Aflv_2413
Name: thrC
Funciton: Threonine synthase (EC 4.2.3.1)
Locus tag: Aflv_2412
Name: thrB
Funciton: Homoserine kinase (EC 2.7.1.39)
Aflv_2414
hom
Homoserine dehydrogenase (EC 1.1.1.3)
Aflv_2413
thrC
Threonine synthase (EC 4.2.3.1)
Aflv_2412
thrB
Homoserine kinase (EC 2.7.1.39)
Position: -136
Score: 4.8
Sequence: AATAATCAAAAAATT
Position: -79
Score: 4.7
Sequence: AATTTTCAAATAAAT
Locus tag: Aflv_0590
Name: dat
Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Aflv_0590
dat
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -25
Score: 4.9
Sequence: AAAATTCAGAAAATT
Locus tag: Aflv_1279
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Aflv_1280
Name: null
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: Aflv_1281
Name: Aflv_1281
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Aflv_1279
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Aflv_1280
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Aflv_1281
Aflv_1281
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -120
Score: 4.6
Sequence: TATTTTATGAAAAAT
Locus tag: Aflv_0953
Name: spo0A
Funciton: Stage 0 sporulation two-component response regulator (Spo0A)
Aflv_0953
spo0A
Stage 0 sporulation two-component response regulator (Spo0A)
Position: -113
Score: 5
Sequence: ATTTTTCAAAAAATT
Locus tag: Aflv_1525
Name: null
Funciton: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Locus tag: Aflv_1524
Name: null
Funciton: 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
Aflv_1525
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Aflv_1524
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
Position: -166
Score: 4.5
Sequence: ATTTTTTAAAATATT
Locus tag: Aflv_2428
Name: null
Funciton: Sodium/proline symporter
Aflv_2428
Sodium/proline symporter
Position: -102
Score: 4.6
Sequence: AAATGTTAGAAAATT
Locus tag: Aflv_2133
Name: oppA
Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Locus tag: Aflv_2132
Name: oppB
Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: Aflv_2131
Name: oppC
Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Locus tag: Aflv_2130
Name: oppD
Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: Aflv_2129
Name: oppF
Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Aflv_2133
oppA
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Aflv_2132
oppB
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Aflv_2131
oppC
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Aflv_2130
oppD
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Aflv_2129
oppF
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Position: -35
Score: 4.7
Sequence: TATTTTCCGAAAATT
Locus tag: Aflv_2073
Name: yjcG
Funciton: RNA ligase/cyclic nucleotide phosphodiesterase
Locus tag: Aflv_2074
Name: yjcF
Funciton: GNAT family acetyltransferase YjcF
Aflv_2073
yjcG
RNA ligase/cyclic nucleotide phosphodiesterase
Aflv_2074
yjcF
GNAT family acetyltransferase YjcF
Position: -99
Score: 5
Sequence: ATTTTTTAGAAAATT
Locus tag: Aflv_1453
Name: ilvA
Funciton: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Aflv_1453
ilvA
Threonine dehydratase biosynthetic (EC 4.3.1.19)
Position: -121
Score: 4.4
Sequence: AAATTTTTAAATATT
Locus tag: Aflv_2011
Name: lutP
Funciton: L-lactate permease
Aflv_2011
lutP
L-lactate permease
Position: -60
Score: 4.4
Sequence: AATATTTAAAAATTT
Locus tag: Aflv_2010
Name: lutR
Funciton: Transcriptional regulator of L-lactate utilization, GntR family
Aflv_2010
lutR
Transcriptional regulator of L-lactate utilization, GntR family
Position: -47
Score: 4.8
Sequence: AATTATCAGAAATTT
Locus tag: Aflv_1055
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Aflv_1055
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Position: -101
Score: 5.1
Sequence: AATTTTTAAAAAATT
Locus tag: Aflv_0461
Name: acuA
Funciton: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Locus tag: Aflv_0460
Name: acuB
Funciton: Component of the acetoin degradation regulation pathway
Locus tag: Aflv_0459
Name: acuC
Funciton: NAD-independent protein deacetylase AcuC
Aflv_0461
acuA
Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Aflv_0460
acuB
Component of the acetoin degradation regulation pathway
Aflv_0459
acuC
NAD-independent protein deacetylase AcuC
Position: -116
Score: 4.6
Sequence: ATTTTTCTGAAAAAA
Locus tag: Aflv_1527
Name: spoVS
Funciton: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
Aflv_1527
spoVS
Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
Position: -209
Score: 4.3
Sequence: AAAAGTCTGATAATT
Locus tag: Aflv_0504
Name: citZ
Funciton: Citrate synthase (si) (EC 2.3.3.1)
Locus tag: Aflv_0505
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: Aflv_0506
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Aflv_0504
citZ
Citrate synthase (si) (EC 2.3.3.1)
Aflv_0505
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Aflv_0506
mdh
Malate dehydrogenase (EC 1.1.1.37)
Position: -238
Score: 4.7
Sequence: AATTTTCATATTATT
Locus tag: Aflv_0217
Name: bacD
Funciton: Alanine-anticapsin ligase BacD
Aflv_0217
bacD
Alanine-anticapsin ligase BacD
Position: -32
Score: 4.7
Sequence: AATTGTGTGAAAATT
Locus tag: Aflv_2391
Name: alaR
Funciton: Transcriptional regulator of alanine metabolism, Lrp/AsnC family
Locus tag: Aflv_2390
Name: alaT
Funciton: Aspartate aminotransferase (EC 2.6.1.1)
Aflv_2391
alaR
Transcriptional regulator of alanine metabolism, Lrp/AsnC family
Aflv_2390
alaT
Aspartate aminotransferase (EC 2.6.1.1)
Position: -91
Score: 4.5
Sequence: TATTTTTTAAAAAAT
Position: -90
Score: 4.7
Sequence: ATTTTTTAAAAAATT
Locus tag: Aflv_2293
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Aflv_2293
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -122
Score: 4.6
Sequence: AATTTTCAAAAAACA
Locus tag: Aflv_0257
Name: adeC
Funciton: Adenine deaminase (EC 3.5.4.2)
Aflv_0257
adeC
Adenine deaminase (EC 3.5.4.2)
Position: -92
Score: 4.4
Sequence: ATTTTTTAAAAAAAT
Locus tag: Aflv_0145
Name: pdaB
Funciton: Probable polysaccharide deacetylase
Aflv_0145
pdaB
Probable polysaccharide deacetylase
Position: -50
Score: 4.3
Sequence: AATTTTGTTATAATT
Locus tag: Aflv_2607
Name: ushA
Funciton: 5'-nucleotidase (EC 3.1.3.5)
Aflv_2607
ushA
5'-nucleotidase (EC 3.1.3.5)
Position: -228
Score: 4.4
Sequence: ATTTTTCGGAAAATA
Position: -200
Score: 4.6
Sequence: AAAAATCAGAAAATT
Locus tag: Aflv_2067
Name: metI
Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: Aflv_2066
Name: metC
Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
Aflv_2067
metI
Cystathionine gamma-synthase (EC 2.5.1.48)
Aflv_2066
metC
Cystathionine beta-lyase (EC 4.4.1.8)
Position: -35
Score: 5.2
Sequence: AATTATCTGAAAATT
Locus tag: Aflv_2401
Name: yuiA
Funciton: Conserved hypothetical protein
Locus tag: Aflv_2400
Name: yuiB
Funciton: Hypothetical membrane protein
Locus tag: Aflv_2399
Name: yuiC
Funciton: Cell wall-binding protein
Aflv_2401
yuiA
Conserved hypothetical protein
Aflv_2400
yuiB
Hypothetical membrane protein
Aflv_2399
yuiC
Cell wall-binding protein
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