Regulons of Ralstonia pickettii 12J
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
6 |
6 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
5 |
5 |
| TF |
Dnr |
Nitric oxide |
Denitrification |
2 |
1 |
| TF |
FadP |
|
Fatty acid degradation |
14 |
12 |
| TF |
FruR2 |
Fructose-1-phosphate |
Fructose utilization |
2 |
4 |
| TF |
Fur |
Iron ion, (Fe2+) |
Iron homeostasis |
10 |
10 |
| TF |
GabR |
Gamma-aminobutyric acid |
Gamma-aminobutyrate utilization |
3 |
2 |
| TF |
GguR |
|
Glucarate utilization; Galactarate utilization |
3 |
2 |
| TF |
GulR |
|
Glucuronate utilization; Galacturonate utilization; Galactarate utilization; Glucarate utilization |
2 |
4 |
| TF |
H16_A0963 |
|
|
1 |
1 |
| TF |
H16_A0970 |
|
|
2 |
1 |
| TF |
H16_A2655 |
|
Metabolite transport |
2 |
1 |
| TF |
H16_B2241 |
|
Alkanesulfonates utilization |
1 |
1 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
3 |
4 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
4 |
3 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
2 |
| TF |
LexA |
DNA damage |
SOS response |
7 |
7 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
9 |
10 |
| TF |
MerR |
Mercury ion, (Hg2+) |
Mercury resistance |
1 |
1 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
2 |
2 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
2 |
2 |
| TF |
ModE3 |
Tungsten |
Tungsten homeostasis |
3 |
2 |
| TF |
NmlR |
Diamide |
Carbonyl stress response |
1 |
1 |
| TF |
NorR |
Nitric oxide |
Nitrosative stress response |
3 |
5 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
3 |
6 |
| TF |
NsrR |
Nitric oxide |
Nitrosative stress response |
5 |
7 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
3 |
3 |
| TF |
OapR |
|
Gamma-aminobutyrate utilization |
1 |
1 |
| TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
6 |
3 |
| TF |
PdxW |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
2 |
2 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
2 |
1 |
| TF |
PtxS |
2-keto-D-gluconate |
2-ketogluconate utilization |
1 |
1 |
| TF |
RALTA_A0216 |
|
|
1 |
1 |
| TF |
RSc1790 |
|
Sugar utilization |
1 |
1 |
| TF |
RbsR |
Ribose |
Ribose utilization |
1 |
1 |
| TF |
SdhR |
|
Tricarboxylic acid cycle |
10 |
10 |
| TF |
UraR |
Uracil |
Pyrimidine utilization |
3 |
4 |
| TF |
UreR |
|
|
1 |
1 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
4 |
4 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
1 |
1 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
| RNA |
GEMM_RNA_motif |
Cyclic diguanylate |
Second messenger response |
1 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
2 |
4 |
| RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
1 |
1 |
| RNA |
sucA |
|
Tricarboxylic acid cycle |
1 |
1 |
| RNA |
yybP-ykoY |
|
|
3 |
3 |
Export
|
Regulated Genes
|
[ Tab delimited format ]
|
DOWNLOAD
|
|
Regulatory Sites
|
[ FASTA format ]
|
DOWNLOAD
|
