Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Ralstonia pickettii 12J

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 6 6
TF CueR Copper ion, (Cu+) Copper resistance 5 5
TF Dnr Nitric oxide Denitrification 2 1
TF FadP Fatty acid degradation 14 12
TF FruR2 Fructose-1-phosphate Fructose utilization 2 4
TF Fur Iron ion, (Fe2+) Iron homeostasis 10 10
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 3 2
TF GguR Glucarate utilization; Galactarate utilization 3 2
TF GulR Glucuronate utilization; Galacturonate utilization; Galactarate utilization; Glucarate utilization 2 4
TF H16_A0963 1 1
TF H16_A0970 2 1
TF H16_A2655 Metabolite transport 2 1
TF H16_B2241 Alkanesulfonates utilization 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 4
TF HrcA Heat shock Heat shock response 2 2
TF HutC cis-Urocanic acid Histidine utilization 4 3
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 2
TF LexA DNA damage SOS response 7 7
TF LiuR Branched-chain amino acid degradation 9 10
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF MetR Homocysteine Methionine biosynthesis 2 2
TF ModE Molybdate Molybdenum homeostasis 2 2
TF ModE3 Tungsten Tungsten homeostasis 3 2
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 3 5
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 6
TF NsrR Nitric oxide Nitrosative stress response 5 7
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF OapR Gamma-aminobutyrate utilization 1 1
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 6 3
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 2
TF PsrA Oleate Fatty acid degradation 2 1
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 1 1
TF RALTA_A0216 1 1
TF RSc1790 Sugar utilization 1 1
TF RbsR Ribose Ribose utilization 1 1
TF SdhR Tricarboxylic acid cycle 10 10
TF UraR Uracil Pyrimidine utilization 3 4
TF UreR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 2 4
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
RNA sucA Tricarboxylic acid cycle 1 1
RNA yybP-ykoY 3 3
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