Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Erwinia amylovora ATCC 49946

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 2 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 11 16
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 2 2
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 164 86
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 4 3
TF EAM_2333 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 9 8
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 46 21
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 26 13
TF Fur Iron ion, (Fe2+) Iron homeostasis 29 30
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GalR/GalS Galactose Galactose utilization 4 5
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 5
TF GntR Gluconate Gluconate utilization 2 2
TF HpxS Allantoin utilization 1 2
TF HutC cis-Urocanic acid Histidine utilization 5 6
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 3
TF LexA DNA damage SOS response 24 23
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 16 12
TF MetR Homocysteine Methionine biosynthesis 7 10
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 5 5
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 2
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 4 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 4 4
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 4 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 11 12
TF PdhR Pyruvate Pyruvate metabolism 4 1
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 28 25
TF RbsR Ribose Ribose utilization 1 2
TF RutR Uracil Pyrimidine utilization 2 1
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 2
TF SoxR Paraquat Superoxide stress response 2 2
TF TrpR Tryptophan Tryptophan biosynthesis 4 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 7 6
TF YdcR 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 4
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 2 1
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