Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Erwinia amylovora ATCC 49946

Properties
Regulator type: Transcription factor
TF locus tag: EAM_1775
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Enterobacteriales
Statistics of regulated genes:
- Genes 43
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 685 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -119
Score: 3.9
Sequence: TTGCTTTCGGACAA
Locus tag: EAM_2301
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
EAM_2301
ackA
Acetate kinase (EC 2.7.2.1)
Position: -124
Score: 3.9
Sequence: TCGATTGAAATCAC
Locus tag: EAM_3481
Name: atpI
Funciton: ATP synthase protein I
Locus tag: EAM_3480
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: EAM_3479
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: EAM_3478
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: EAM_3477
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: EAM_3476
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: EAM_3475
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: EAM_3474
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: EAM_3473
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
EAM_3481
atpI
ATP synthase protein I
EAM_3480
atpB
ATP synthase A chain (EC 3.6.3.14)
EAM_3479
atpE
ATP synthase C chain (EC 3.6.3.14)
EAM_3478
atpF
ATP synthase B chain (EC 3.6.3.14)
EAM_3477
atpH
ATP synthase delta chain (EC 3.6.3.14)
EAM_3476
atpA
ATP synthase alpha chain (EC 3.6.3.14)
EAM_3475
atpG
ATP synthase gamma chain (EC 3.6.3.14)
EAM_3474
atpD
ATP synthase beta chain (EC 3.6.3.14)
EAM_3473
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Position: -146
Score: 4.2
Sequence: TTGACCAGCATCAA
Locus tag: EAM_1473
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
EAM_1473
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -115
Score: 3.4
Sequence: TTGCTTAAGATCGT
Locus tag: EAM_1542
Name: dcuS
Funciton: Fumarate respiration sensor kinase protein DcuS
Locus tag: EAM_1541
Name: dcuR
Funciton: Fumarate respiration transcriptional regulator DcuR
EAM_1542
dcuS
Fumarate respiration sensor kinase protein DcuS
EAM_1541
dcuR
Fumarate respiration transcriptional regulator DcuR
Position: -160
Score: 5.4
Sequence: TTGATCTAAATCAA
Locus tag: EAM_1884
Name: ompW
Funciton: outer membrane protein W; colicin S4 receptor; putative transporter
EAM_1884
ompW
outer membrane protein W; colicin S4 receptor; putative transporter
Position: -88
Score: 4
Sequence: TTGATATATAGCGA
Locus tag: EAM_1217
Name: ybhK
Funciton: Predicted transferase, NAD(P)-binding
EAM_1217
ybhK
Predicted transferase, NAD(P)-binding
Position: -244
Score: 3.5
Sequence: CTGTGATAAATCAG
Locus tag: EAM_1284
Name: moeA
Funciton: Molybdopterin biosynthesis protein MoeA
Locus tag: EAM_1283
Name: moeB
Funciton: Molybdopterin biosynthesis protein MoeB
EAM_1284
moeA
Molybdopterin biosynthesis protein MoeA
EAM_1283
moeB
Molybdopterin biosynthesis protein MoeB
Position: 37
Score: 4.4
Sequence: TGGATGTAAATCAA
Locus tag: EAM_1866
Name: acnA
Funciton: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
EAM_1866
acnA
Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -212
Score: 4.2
Sequence: TCGCTATATATCAA
Locus tag: EAM_1218
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: EAM_1219
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: EAM_1220
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: EAM_1221
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: EAM_1222
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
EAM_1218
moaA
Molybdenum cofactor biosynthesis protein MoaA
EAM_1219
moaB
Molybdenum cofactor biosynthesis protein MoaB
EAM_1220
moaC
Molybdenum cofactor biosynthesis protein MoaC
EAM_1221
moaD
Molybdenum cofactor biosynthesis protein MoaD
EAM_1222
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -199
Score: 3.6
Sequence: TTAATCAAAATGAA
Locus tag: EAM_0199
Name: ysgA
Funciton: Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
EAM_0199
ysgA
Predcited carboxymethylenebutenolidase (EC 3.1.1.45)
Position: -171
Score: 3.7
Sequence: ATGATACTCATCAG
Locus tag: EAM_1167
Name: gltA
Funciton: Citrate synthase (EC 2.3.3.1)
EAM_1167
gltA
Citrate synthase (EC 2.3.3.1)
Position: -106
Score: 4.2
Sequence: TTGCTTCAGGTCAA
Locus tag: EAM_3059
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
EAM_3059
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Position: -177
Score: 4.9
Sequence: TTGATGCAAATCAA
Locus tag: EAM_2526
Name: ung
Funciton: Uracil-DNA glycosylase (EC 3.2.2.27)
EAM_2526
ung
Uracil-DNA glycosylase (EC 3.2.2.27)
Position: -31
Score: 4
Sequence: ATTATTTGCATCAA
Locus tag: EAM_0103
Name: pfkA
Funciton: 6-phosphofructokinase (EC 2.7.1.11)
EAM_0103
pfkA
6-phosphofructokinase (EC 2.7.1.11)
Position: 9
Score: 3.7
Sequence: TTGTCTAAAGTCAT
Locus tag: EAM_1364
Name: ssuA
Funciton: Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
Locus tag: EAM_1363
Name: ssuD
Funciton: Alkanesulfonate monooxygenase (EC 1.14.14.5)
Locus tag: EAM_1362
Name: ssuC
Funciton: Alkanesulfonates transport system permease protein
Locus tag: EAM_1361
Name: ssuB
Funciton: Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB
EAM_1364
ssuA
Sulfonate ABC transporter, periplasmic sulfonate-binding protein ssuA / Alkanesulfonates-binding protein
EAM_1363
ssuD
Alkanesulfonate monooxygenase (EC 1.14.14.5)
EAM_1362
ssuC
Alkanesulfonates transport system permease protein
EAM_1361
ssuB
Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB
Position: -207
Score: 3.7
Sequence: GTTATTTAAATCAG
Locus tag: EAM_0985
Name: cyoA
Funciton: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: EAM_0984
Name: cyoB
Funciton: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: EAM_0983
Name: cyoC
Funciton: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: EAM_0982
Name: cyoD
Funciton: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: EAM_0981
Name: cyoE
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
EAM_0985
cyoA
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
EAM_0984
cyoB
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
EAM_0983
cyoC
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
EAM_0982
cyoD
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
EAM_0981
cyoE
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Position: -194
Score: 4
Sequence: TTGATATAACACGA
Locus tag: EAM_0416
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: EAM_0415
Name: dcuA
Funciton: C4-dicarboxylate transporter DcuA
EAM_0416
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
EAM_0415
dcuA
C4-dicarboxylate transporter DcuA
Position: -194
Score: 3.8
Sequence: CTGATATTAGTCAT
Locus tag: EAM_0260
Name: ubiC
Funciton: Chorismate--pyruvate lyase (EC 4.1.3.40)
Locus tag: EAM_0261
Name: ubiA
Funciton: 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-)
EAM_0260
ubiC
Chorismate--pyruvate lyase (EC 4.1.3.40)
EAM_0261
ubiA
4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.-)
Position: -399
Score: 4.5
Sequence: TTGATGCAGGTCAA
Locus tag: EAM_0640
Name: arcA
Funciton: Aerobic respiration control protein arcA
EAM_0640
arcA
Aerobic respiration control protein arcA
Position: -264
Score: 3.8
Sequence: TTCTCTTAAGTCAA
Position: -169
Score: 4
Sequence: TTTTTTTTAAACAA
Locus tag: EAM_2150
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
EAM_2150
gnd
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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