Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Edwardsiella tarda EIB202

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR2 Galactosamine-6-phosphate; N-acetylgalactosamine-6-phosphate N-acetylgalactosamine utilization 2 1
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 10 17
TF BirA Biotin Biotin biosynthesis 3 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 184 99
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 5 2
TF ExuR Galacturonate Galacturonate utilization 6 6
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 4 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 4
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 64 44
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 23 13
TF FucR L-fuculose-1-phosphate Fucose utilization 2 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 29
TF GalR/GalS Galactose Galactose utilization 3 5
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 4
TF GntR Gluconate Gluconate utilization 2 2
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 3
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 10 5
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 1
TF LexA DNA damage SOS response 21 17
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 11 7
TF MetR Homocysteine Methionine biosynthesis 7 7
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 8 5
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 4
TF NanR N-acetylneuraminic acid Sialic acid utilization 1 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 18 6
TF NhaR Potassium ion Osmotic stress response 2 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 5 3
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 2 4
TF NsrR Nitric oxide Nitrosative stress response 7 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 6
TF PdhR Pyruvate Pyruvate metabolism 4 3
TF PurR Hypoxanthine; Guanine Purine metabolism 29 20
TF RbsR Ribose Ribose utilization 1 1
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 3 4
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 4 5
TF TrpR Tryptophan Tryptophan biosynthesis 4 4
TF TtrR Tetrathionate Tetrathionate reduction 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 7 6
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 2 2
TF UxuR Glucuronate Glucuronate utilization 10 8
TF XapR Deoxyinosine; Xanthosine Xanthosine utilization 1 1
TF YihL 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 4 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 2 2
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