Regulons of Methylibium petroleiphilum PM1

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	2	2
TF	CueR	Copper ion, (Cu+)	Copper resistance	5	5
TF	Daci_0595		Metabolite transport	2	1
TF	Daci_3836			4	2
TF	FadP		Fatty acid degradation	4	4
TF	FdsR	Formate	Formate oxydation	2	2
TF	GguR		Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization	3	3
TF	GudR		Glucarate utilization	2	3
TF	HrcA	Heat shock	Heat shock response	2	2
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	1
TF	LexA	DNA damage	SOS response	10	9
TF	LiuQ		Branched-chain amino acid degradation	3	4
TF	MdcY		Malonate metabolism	3	2
TF	MerR	Mercury ion, (Hg2+)	Mercury resistance	1	1
TF	ModE3	Tungsten	Tungsten homeostasis	3	1
TF	NikR	Nickel ion, (Ni2+)	Nickel homeostasis	2	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	5	1
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	2	2
TF	PdxQ3		Metabolite transport; Pyridoxine/pyridoxal homeostasis	1	1
TF	PdxR3		Pyridoxine/pyridoxal homeostasis	2	4
TF	PhnF		Phosphonate utilization	2	2
TF	SdhR		Tricarboxylic acid cycle	5	3
TF	YdcR			2	1
TF	YrdX			2	3
RNA	SAH_riboswitch	S-adenosylhomocysteine	Methionine metabolism	2	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	2

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --