# TF - NrdR: Mpe_A2939
>Mpe_A3214(nrdA) Score=5.4 Pos=-294 [Methylibium petroleiphilum PM1]
GCGCTAGATATAGTGT
>Mpe_A1693(Ajs_0086) Score=5.6 Pos=-1880 [Methylibium petroleiphilum PM1]
ACACTACCGGTAGTGT
>Mpe_A1693(Ajs_0086) Score=4.4 Pos=-1848 [Methylibium petroleiphilum PM1]
CCACTACCGGTAGAGC
>Mpe_A3214(nrdA) Score=5.6 Pos=-325 [Methylibium petroleiphilum PM1]
ACGCTACATATAGTGC
# TF - NikR: Mpe_A2805
>Mpe_A2804(omp_Ni) Score=7.6 Pos=-76 [Methylibium petroleiphilum PM1]
GTATGAA-------------ATCATAC
>Mpe_A2798(omp_Ni-2) Score=7 Pos=-108 [Methylibium petroleiphilum PM1]
GTATGAG-------------ATCTTAC
# TF - IscR: Mpe_A2263
>Mpe_A2263(iscR) Score=5.1 Pos=-98 [Methylibium petroleiphilum PM1]
ATAATTGAGCTATTCAGTCGGGATT
# TF - NtrC: Mpe_A2073
>Mpe_A2076(glnA) Score=4.6 Pos=-244 [Methylibium petroleiphilum PM1]
GGCCCCGAAATGGTGCG
# TF - LexA: Mpe_A1866
>Mpe_A0910(Aave_0184) Score=5.4 Pos=-49 [Methylibium petroleiphilum PM1]
TACTGTATTTACGAACAGTA
>Mpe_A1866(lexA) Score=5.4 Pos=-67 [Methylibium petroleiphilum PM1]
CACTGGATAAAAATTCAGTG
>Mpe_A1866(lexA) Score=5.8 Pos=-86 [Methylibium petroleiphilum PM1]
AGCTGGATAAAAATACAGTC
>Mpe_A2509(PF04055) Score=6 Pos=-33 [Methylibium petroleiphilum PM1]
TACTGTACAAAAATACAGTA
>Mpe_B0048(umuD) Score=5.3 Pos=-55 [Methylibium petroleiphilum PM1]
TACTGTATGGATGTACAGCA
>Mpe_B0052(umuC) Score=5.8 Pos=-6 [Methylibium petroleiphilum PM1]
TACTGTATGTCCATACAGTA
>Mpe_B0617(imuA) Score=5.2 Pos=-133 [Methylibium petroleiphilum PM1]
TACTGTATGCCCATACAGTC
>Mpe_A0075(recA) Score=5.3 Pos=-54 [Methylibium petroleiphilum PM1]
TACTGTACAAATAACCAGTT
>Mpe_A1534(imuA) Score=5.7 Pos=-44 [Methylibium petroleiphilum PM1]
TACTGTATTTATGTACAGTA
# TF - FadP: Mpe_A0420
>Mpe_A1775(fadB) Score=5.7 Pos=-47 [Methylibium petroleiphilum PM1]
TCGAACGATCGTTCTA
>Mpe_A1296(etfB) Score=5.1 Pos=-98 [Methylibium petroleiphilum PM1]
CCGAACGATCGTGCTT
>Mpe_A0420(fadP) Score=5.8 Pos=-34 [Methylibium petroleiphilum PM1]
TAGAACGATCGTTCGA
>Mpe_A1443(etfD) Score=5.7 Pos=-87 [Methylibium petroleiphilum PM1]
TAGAACGACCGTTCGT
# TF - LiuQ: Mpe_A3361
>Mpe_A3361(liuQ) Score=5.1 Pos=-176 [Methylibium petroleiphilum PM1]
ATGAGTTTCACTCAA
>Mpe_A3361(liuQ) Score=5.4 Pos=-75 [Methylibium petroleiphilum PM1]
TTGAGCTTTACTCAA
>Mpe_A3360(liuA) Score=5.4 Pos=-114 [Methylibium petroleiphilum PM1]
TTGAGTAAAGCTCAA
>Mpe_A3360(liuA) Score=5.1 Pos=-13 [Methylibium petroleiphilum PM1]
TTGAGTGAAACTCAT
# TF - PhnF: Mpe_B0420, Mpe_B0456
>Mpe_B0420(phnF) Score=4.4 Pos=-28 [Methylibium petroleiphilum PM1]
CCCAGATATCTAGACATCTGGA
>Mpe_B0456(phnF) Score=4.4 Pos=-28 [Methylibium petroleiphilum PM1]
CCCAGATATCTAGACATCTGGA
# TF - PaaR: Mpe_A0992
>Mpe_A0984(paaF) Score=5.7 Pos=-85 [Methylibium petroleiphilum PM1]
GTCTACCGACTGGTCGGTCAAT
>Mpe_A0983(paaY2) Score=5.6 Pos=-78 [Methylibium petroleiphilum PM1]
ATTGACCGACCAGTCGGTAGAC
# RNA - TPP
>Mpe_A1610(thiC) Score=56.8 Pos=-178 [Methylibium petroleiphilum PM1]
GAGCACTGCTCCGGGGTGCACGCTGTTCTGCGTGCTGAGACGGTTATCCGAACCCGCGAACTTGAACCGGTTAGTACCGGCGGAAGAAGAGCTCTCACTCCAGCG
>Mpe_A1495(omp_thi) Score=50.7 Pos=-180 [Methylibium petroleiphilum PM1]
CGACACCAGCTAGGGGTGTTGACCCGCTCTCGCAAGAGGCCCGGGCTCGACTGAGAAAGTCCCTTCGAACCTGATTGAGGTAATCCTCGCGCAGGGAAGCGATCTTCGGTGTGC
# TF - HrcA: Mpe_A3333
>Mpe_A3171(rpoH) Score=7.2 Pos=-54 [Methylibium petroleiphilum PM1]
TTAGCACTCGTTTTACGTGAGTGCTAA
>Mpe_A0427(groS) Score=6.3 Pos=-129 [Methylibium petroleiphilum PM1]
CTAGCACTCGCGCAGACTGAGTGCTAA
# TF - MerR: Mpe_A1661
>Mpe_A1662(merT) Score=5.6 Pos=-57 [Methylibium petroleiphilum PM1]
ACTCCGTACTCAGGTACGTACC
# TF - CadR-PbrR: Mpe_A1657
>Mpe_A2353(pbrT) Score=5.4 Pos=-78 [Methylibium petroleiphilum PM1]
ACCCTGTAGTGGCTACGGACT
>Mpe_A1655(czcD) Score=6 Pos=-55 [Methylibium petroleiphilum PM1]
ACTCTGGAGCAGCTACAGGGT
# TF - PdxR3: Mpe_A2441
>Mpe_A2441(pdxR3) Score=5 Pos=-141 [Methylibium petroleiphilum PM1]
TGGCCAATCGCCTGATAGTGGATC
>Mpe_A2441(pdxR3) Score=4.3 Pos=-217 [Methylibium petroleiphilum PM1]
GATCCACTTCGCTCGAAGTGGATT
>Mpe_A2442(COG0596) Score=5 Pos=-147 [Methylibium petroleiphilum PM1]
GATCCACTATCAGGCGATTGGCCA
>Mpe_A2442(COG0596) Score=4.3 Pos=-71 [Methylibium petroleiphilum PM1]
AATCCACTTCGAGCGAAGTGGATC
# RNA - SAH_riboswitch
>Mpe_A3286(ahcY) Score=63.1 Pos=-148 [Methylibium petroleiphilum PM1]
CTTTCGAGGAGCGTTGCAACTCCCGCCCGGGAGCCAGGCTCGAAAGTCATCCCCCGATGCAACGGCGCTCACCCGCAGG
>Mpe_A0168(metH) Score=41.2 Pos=-163 [Methylibium petroleiphilum PM1]
TGCTCGAGGAGCGTTGCGACGGTTGCCCAGGCTTTGGGACGACCGCCAGGCTCGGGCCGGCGGCACCGCGAGGGCTGCCCTGCAACGGCGCTCACCCCTCCG
# TF - CueR: Mpe_A3534, Mpe_A1639
>Mpe_A1644 Score=5.3 Pos=-81 [Methylibium petroleiphilum PM1]
ACCTTCCCACGTTGTCAAGGT
>Mpe_A1640(copA) Score=4.8 Pos=-59 [Methylibium petroleiphilum PM1]
ACCTTGCCATCGTTAGAACCT
>Mpe_A3536(copZ2) Score=5.5 Pos=-61 [Methylibium petroleiphilum PM1]
ACCTTCCCACCGGGGCAACGT
>Mpe_A3535(copA) Score=5.7 Pos=-34 [Methylibium petroleiphilum PM1]
ACTTTGCCATGATGGGAAGGT
>Mpe_A1641(copZ2) Score=5.2 Pos=-57 [Methylibium petroleiphilum PM1]
ACCTTCCAACAGTAGGAGGGT
# TF - Daci_3836: Mpe_A0770
>Mpe_A0769(Lcho_3026) Score=4.8 Pos=-96 [Methylibium petroleiphilum PM1]
TCTTGTATACCAAT
>Mpe_A0773(uahA) Score=5.1 Pos=-33 [Methylibium petroleiphilum PM1]
TCTGGTACACAAGA
# TF - YrdX: Mpe_A3480
>Mpe_A3479(PF02635) Score=7.1 Pos=-271 [Methylibium petroleiphilum PM1]
GTTGATCG---ATTGATCG
>Mpe_A3479(PF02635) Score=7.2 Pos=-139 [Methylibium petroleiphilum PM1]
CTTGATCG---ATTGATCG
>Mpe_A3479(PF02635) Score=4.8 Pos=-92 [Methylibium petroleiphilum PM1]
GTGGCACA---CGTGCAAA
# TF - FdsR: Mpe_A3707, Mpe_A0339
>Mpe_A3707(fdsR) Score=5.8 Pos=-28 [Methylibium petroleiphilum PM1]
ATATGCGCTGAAGCGCCGAA
>Mpe_A3708(fdsG) Score=5.8 Pos=-167 [Methylibium petroleiphilum PM1]
TTCGGCGCTTCAGCGCATAT
# TF - ModE3: Mpe_A2224
>Mpe_A2223(tupA) Score=5.3 Pos=-102 [Methylibium petroleiphilum PM1]
CTATGCATGCTCGTTCATAT
# TF - PdxQ3: Mpe_A2041
>Mpe_A2040(PF01965) Score=12.3 Pos=-5 [Methylibium petroleiphilum PM1]
GTTGTATG-(1)-ATGACAAT-(6)-ATTGTATT
# TF - Daci_0595: Mpe_A0183
>Mpe_A0184(PF00892) Score=15.8 Pos=-93 [Methylibium petroleiphilum PM1]
GGCGTGTGTCG-(10)-CAGTACAGATC-(15)-ATTCTGTACTG-(0)-TTAGTGTATTG
# TF - YdcR: Mpe_A0752, Mpe_A2446
>Mpe_A0753(Mpe_A0753) Score=7.7 Pos=-46 [Methylibium petroleiphilum PM1]
AACTGATCTGGTTTT---------ATCTGAGCCTTCAAA
# TF - MdcY: Mpe_A2899
>Mpe_A2899(mdcY) Score=4.6 Pos=-62 [Methylibium petroleiphilum PM1]
ATGTATACAT
>Mpe_A2898(Aave_1513) Score=4.6 Pos=-56 [Methylibium petroleiphilum PM1]
ATGTATACAT
# TF - SdhR: Mpe_A2171
>Mpe_A2172(mdh) Score=7.4 Pos=-152 [Methylibium petroleiphilum PM1]
AAAGATGTCTTATATAAGACATAAGA
>Mpe_A1889(aceA) Score=6 Pos=-103 [Methylibium petroleiphilum PM1]
ATAGAAGTCTTATATAAGATAGAAGT
>Mpe_A2171(sdhR) Score=7.4 Pos=-74 [Methylibium petroleiphilum PM1]
TCTTATGTCTTATATAAGACATCTTT
# TF - GudR: Mpe_A0968
>Mpe_A0968(gudR) Score=5.5 Pos=-36 [Methylibium petroleiphilum PM1]
GGATGGTAGCGGTGTCATCT
>Mpe_A0969(tctC4) Score=6 Pos=-73 [Methylibium petroleiphilum PM1]
GAACGGTAGCGCTACCATTT
>Mpe_A0969(tctC4) Score=4.8 Pos=-51 [Methylibium petroleiphilum PM1]
AGACGATAGCGCTACCAGAT
# TF - GguR: Mpe_A0971
>Mpe_A0972(tctC1) Score=4.1 Pos=-77 [Methylibium petroleiphilum PM1]
ACGATGACGTACAACTA
>Mpe_A0972(tctC1) Score=5.1 Pos=-84 [Methylibium petroleiphilum PM1]
ATGTTGTACGATGACGT
>Mpe_A0971(gguR) Score=4.9 Pos=-67 [Methylibium petroleiphilum PM1]
CGGTTGTCATACAACTG