Regulons of Oceanicola batsensis HTCC2597

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	7	7
TF	CceR (GapR)	6-phosphogluconate	Central carbohydrate metabolism	16	13
TF	Chvl			1	1
TF	CueR	Copper ion, (Cu+)	Copper resistance	2	2
TF	EutR		Ectoine utilization	3	2
TF	EutR	Ethanolamine	Ethanolamine utilization	2	2
TF	FnrN	Oxygen	Oxidative stress response; Nitrogen fixation	5	5
TF	HrcA	Heat shock	Heat shock response	1	1
TF	Irr	Heme	Iron homeostasis	6	3
TF	IscR	Iron-sulfur cluster redox state; Iron ion, (Fe2+)	Iron-sulfur cluster biogenesis; Iron homeostasis	10	14
TF	Jann_1459		Sugar utilization	2	2
TF	LexA	DNA damage	SOS response	10	9
TF	LiuR		Branched-chain amino acid degradation	2	1
TF	MetR	Homocysteine	Methionine biosynthesis	3	2
TF	Mur	Manganese ion, (Mn2+)	Manganese homeostasis	3	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	1
TF	NsrR	Nitric oxide	Nitrosative stress response	5	2
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	6	7
TF	OB2597_06045		Sugar utilization	2	2
TF	PhnF		Phosphonate utilization	2	2
TF	RutR	Uracil	Pyrimidine utilization	8	3
TF	SPOA0164			2	2
TF	SmoR	Sorbitol	Sorbitol utilization; Mannitol utilization	2	2
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	3	3
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	4	1
RNA	Glycine	Glycine	Glycine metabolism	1	2
RNA	SAM-SAH	S-adenosylmethionine; S-adenosylhomocysteine	Methionine metabolism	1	1
RNA	SAM_alpha	S-adenosylmethionine	Methionine biosynthesis	3	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	5	4
RNA	mini-ykkC		Multidrug resistance	2	2
RNA	serC		Serine biosynthesis	1	1

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --