Regulog LexA - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Bifidobacteriaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | 11 | 8 |
| Bifidobacterium angulatum DSM 20098 | 11 | 8 |
| Bifidobacterium animalis subsp. lactis AD011 | 11 | 9 |
| Bifidobacterium bifidum NCIMB 41171 | 10 | 7 |
| Bifidobacterium breve DSM 20213 | 10 | 7 |
| Bifidobacterium dentium Bd1 | 11 | 9 |
| Bifidobacterium gallicum DSM 20093 | 8 | 7 |
| Bifidobacterium longum NCC2705 | 10 | 7 |
| Bifidobacterium longum subsp. infantis ATCC 15697 | 10 | 7 |
| Gardnerella vaginalis 409-05 | 9 | 6 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| uvrA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -78 score = 5.63972 sequence = TAGAACACCTGTTCGA Gene: BAD_0840: Excinuclease ABC subunit A |
*
Bifidobacterium angulatum DSM 20098 Site: position = -82 score = 5.7735 sequence = GCGAACATCTGTTCGA Gene: BIFANG_01450: Excinuclease ABC subunit A |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -88 score = 5.8658 sequence = TCGAACAAGTGTTCGA Gene: BLA_1372: Excinuclease ABC subunit A |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -90 score = 5.56034 sequence = TCGAACTGATGTTCGA Gene: BbifN4_010100004854: Excinuclease ABC subunit A |
*2
Bifidobacterium breve DSM 20213 Site: position = -106 score = 6.03669 sequence = TCGAACATGTGTTCGA Gene: BIFBRE_01317: Excinuclease ABC subunit A Gene: BIFBRE_01318: Excinuclease ABC subunit A |
*
Bifidobacterium dentium Bd1 Site: position = -82 score = 5.63972 sequence = TCGAACAGGTGTTCTA Gene: BDP_1131: Excinuclease ABC subunit A |
*
Bifidobacterium gallicum DSM 20093 Site: position = -102 score = 6.03669 sequence = TCGAACATGTGTTCGA Gene: BIFGAL_01593: Excinuclease ABC subunit A |
*
Bifidobacterium longum NCC2705 Site: position = -102 score = 5.58669 sequence = TCGAACAAGCGTTCGA Gene: BL0702: Excinuclease ABC subunit A |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -204 score = 5.58669 sequence = TCGAACAAGCGTTCGA Gene: Blon_1082: Excinuclease ABC subunit A |
*
Gardnerella vaginalis 409-05 Site: position = -92 score = 5.59873 sequence = TCGAACACTTGTTCTA Gene: HMPREF0424_0816: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| uvrC |
Gene: BAD_0839: Excinuclease ABC subunit C |
Gene: BIFANG_01449: Excinuclease ABC subunit C |
Gene: BLA_1370: Excinuclease ABC subunit C |
Gene: BbifN4_010100004849: Excinuclease ABC subunit C |
Gene: BIFBRE_01319: Excinuclease ABC subunit C |
Gene: BDP_1132: Excinuclease ABC subunit C |
Gene: BIFGAL_01595: Excinuclease ABC subunit C |
Gene: BL0703: Excinuclease ABC subunit C |
Gene: Blon_1083: Excinuclease ABC subunit C |
Gene: HMPREF0424_0815: Excinuclease ABC subunit C |
Excinuclease ABC subunit C |
| CRON 2. | |||||||||||
| ruvA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -41 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BAD_0804: Holliday junction DNA helicase RuvA |
*
Bifidobacterium angulatum DSM 20098 Site: position = -29 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BIFANG_01367: Holliday junction DNA helicase RuvA |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -33 score = 5.80388 sequence = CCGAACATATGTTCGA Gene: BLA_1342: Holliday junction DNA helicase RuvA |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -169 score = 5.40691 sequence = TCGAACAGATGTTCTG Gene: BbifN4_010100004709: Holliday junction DNA helicase RuvA |
*
Bifidobacterium breve DSM 20213 Site: position = -36 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BIFBRE_01347: Holliday junction DNA helicase RuvA |
*
Bifidobacterium dentium Bd1 Site: position = -151 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BDP_1176: Holliday junction DNA helicase RuvA |
*
Bifidobacterium gallicum DSM 20093 Site: position = -125 score = 5.7735 sequence = GCGAACATCTGTTCGA Gene: BIFGAL_01661: Holliday junction DNA helicase RuvA |
*
Bifidobacterium longum NCC2705 Site: position = -50 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BL0728: Holliday junction DNA helicase RuvA |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -50 score = 6.15329 sequence = TCGAACAGATGTTCGA Gene: Blon_1157: Holliday junction DNA helicase RuvA |
*
Gardnerella vaginalis 409-05 Site: position = -79 score = 5.61917 sequence = TAGAACAGATGTTCTA Gene: HMPREF0424_0837: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| ruvB |
Gene: BAD_0805: Holliday junction DNA helicase RuvB |
Gene: BIFANG_01366: Holliday junction DNA helicase RuvB |
Gene: BLA_1341: Holliday junction DNA helicase RuvB |
Gene: BbifN4_010100004704: Holliday junction DNA helicase RuvB |
Gene: BIFBRE_01348: Holliday junction DNA helicase RuvB |
Gene: BDP_1175: Holliday junction DNA helicase RuvB |
Gene: BIFGAL_01660: Holliday junction DNA helicase RuvB |
Gene: BL0729: Holliday junction DNA helicase RuvB |
Gene: Blon_1158: Holliday junction DNA helicase RuvB |
Gene: HMPREF0424_0836: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 3. | |||||||||||
| lexA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -8 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -76 score = 5.75632 sequence = TCGAACAGCTGTTCTA Site: position = -60 score = 5.04752 sequence = TCGAACGCTTGTTCCA Site: position = -40 score = 5.18239 sequence = TGGCACATATGTTCGA Gene: BAD_1115: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -113 score = 5.88623 sequence = TCGAACATCTGTTCTA Site: position = -97 score = 5.56614 sequence = TCGAACGTTTGTTCTA Site: position = -43 score = 5.66757 sequence = TCGAACAAATGTTTGA Site: position = -77 score = 5.00291 sequence = TTGCACAGATGTTCGA Gene: BIFANG_00990: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -64 score = 5.70856 sequence = TCGAACATCTGTTTGA Site: position = -127 score = 5.84524 sequence = TCGAACAAATGTTCTA Site: position = -94 score = 5.59166 sequence = TCGCACATCTGTTCGA Gene: BLA_0790: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -51 score = 4.87871 sequence = TCGAACGAATGTTTGT Site: position = -105 score = 4.54457 sequence = TAGAACAACTGTACTC Gene: BbifN4_010100002264: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium breve DSM 20213 Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -120 score = 5.37647 sequence = TCGAACATCTGTTCTT Site: position = -100 score = 5.0115 sequence = TGGCACAAATGTTCGA Site: position = -136 score = 5.59873 sequence = TCGAACAAGTGTTCTA Gene: BIFBRE_01804: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium dentium Bd1 Site: position = -286 score = 5.70856 sequence = TCGAACAGATGTTTGA Gene: BDP_1556: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -25 score = 5.73251 sequence = TCGAACATTTGTTCGC Site: position = 11 score = 5.55068 sequence = TCGCACATTTGTTCGA Gene: BIFGAL_00302: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium longum NCC2705 Site: position = -120 score = 5.20558 sequence = TCGAACAACTGTTCTT Site: position = -100 score = 4.7324 sequence = TGGCACAAACGTTCGA Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -136 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BL1310: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -136 score = 5.88623 sequence = TCGAACAGATGTTCTA Site: position = -120 score = 5.20558 sequence = TCGAACAACTGTTCTT Site: position = -100 score = 5.0115 sequence = TGGCACAAATGTTCGA Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Gene: Blon_0842: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Gardnerella vaginalis 409-05 Site: position = -114 score = 4.91758 sequence = TCGAACAGATGTATTA Site: position = -94 score = 4.56677 sequence = TGACACATTTGTTCGA Site: position = -62 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -130 score = 4.77717 sequence = CTGAACATTTGTTCTA Gene: HMPREF0424_0572: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 4. | |||||||||||
| dinP2 |
Gene: BAD_0303: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -47 score = 5.8658 sequence = TCGAACAAGTGTTCGA Gene: BIFANG_00697: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -29 score = 5.08522 sequence = TCGAACATCTGTTCAG Gene: BLA_0349: DNA polymerase IV (EC 2.7.7.7) |
Gene: BbifN4_010100007692: DNA polymerase IV (EC 2.7.7.7) |
Gene: BIFBRE_00239: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium dentium Bd1 Site: position = 4 score = 5.16938 sequence = TCGAACATCTGTTTCA Gene: BDP_0412: DNA polymerase IV (EC 2.7.7.7) |
Gene: BIFGAL_00779: DNA polymerase IV (EC 2.7.7.7) |
Gene: BL1565: DNA polymerase IV (EC 2.7.7.7) |
Gene: Blon_2250: DNA polymerase IV (EC 2.7.7.7) |
*
Gardnerella vaginalis 409-05 Site: position = -107 score = 5.56614 sequence = TCGAACGTTTGTTCTA Gene: HMPREF0424_0243: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 5. | |||||||||||
| dinP1 |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -110 score = 5.74428 sequence = TCGAACAGCCGTTCGA Gene: BAD_0522: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -41 score = 6.00409 sequence = TCGAACGTATGTTCGA Gene: BIFANG_00973: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -27 score = 5.8332 sequence = TCGAACGTTTGTTCGA Gene: BLA_1129: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -61 score = 4.61555 sequence = TCGAACATATGTCTCA Gene: BbifN4_010100006359: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium breve DSM 20213 Site: position = -8 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: BIFBRE_00833: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium dentium Bd1 Site: position = -75 score = 5.87419 sequence = TCGAACGGATGTTCGA Gene: BDP_0721: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -8 score = 6.2832 sequence = TCGAACATATGTTCGA Gene: BIFGAL_01091: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium longum NCC2705 Site: position = -58 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: BL1114: DNA polymerase IV (EC 2.7.7.7) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -64 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: Blon_1951: DNA polymerase IV (EC 2.7.7.7) |
|
DNA polymerase IV (EC 2.7.7.7) |
| CRON 6. | |||||||||||
| rarA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -48 score = 5.75759 sequence = TCGAACGTGTGTTCGA Gene: BAD_0585: Recombination factor protein RarA |
Gene: BIFANG_00995: Recombination factor protein RarA |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -56 score = 6.1123 sequence = TCGAACATTTGTTCGA Gene: BLA_1204: Recombination factor protein RarA |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -38 score = 5.61771 sequence = TCGAACCTATGTTCGA Gene: BbifN4_010100002924: Recombination factor protein RarA |
*
Bifidobacterium breve DSM 20213 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: BIFBRE_00563: Recombination factor protein RarA |
*
Bifidobacterium dentium Bd1 Site: position = -21 score = 5.75759 sequence = TCGAACGTGTGTTCGA Gene: BDP_0795: Recombination factor protein RarA |
*
Bifidobacterium gallicum DSM 20093 Site: position = -68 score = 6.2832 sequence = TCGAACATATGTTCGA Gene: BIFGAL_01848: Recombination factor protein RarA |
*
Bifidobacterium longum NCC2705 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: BL0029: Recombination factor protein RarA |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: Blon_0716: Recombination factor protein RarA |
*
Gardnerella vaginalis 409-05 Site: position = -38 score = 5.56614 sequence = TCGAACGTTTGTTCTA Gene: HMPREF0424_0826: Recombination factor protein RarA |
Recombination factor protein RarA |
| CRON 7. | |||||||||||
| uvrB |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -87 score = 5.76963 sequence = TAGAACACATGTTCGA Gene: BAD_0676: Excinuclease ABC subunit B |
*
Bifidobacterium angulatum DSM 20098 Site: position = -80 score = 5.57313 sequence = TGGAACAAATGTTCGA Gene: BIFANG_01139: Excinuclease ABC subunit B |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -67 score = 5.60713 sequence = TAGAACAGACGTTCGA Gene: BLA_1496: Excinuclease ABC subunit B |
Gene: BbifN4_010100003339: Excinuclease ABC subunit B |
Gene: BIFBRE_01049: Excinuclease ABC subunit B |
*
Bifidobacterium dentium Bd1 Site: position = -58 score = 5.73703 sequence = TAGAACGTATGTTCGA Gene: BDP_0902: Excinuclease ABC subunit B |
Gene: BIFGAL_00355: Excinuclease ABC subunit B |
Gene: BL0990: Excinuclease ABC subunit B |
Gene: Blon_1747: Excinuclease ABC subunit B |
Gene: HMPREF0424_0606: Excinuclease ABC subunit B |
Excinuclease ABC subunit B |
| CRON 8. | |||||||||||
| recA |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -190 score = 5.67397 sequence = TCGAACAGATGTTCGG Gene: BAD_1024: Recombinase A |
*
Bifidobacterium angulatum DSM 20098 Site: position = -229 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BIFANG_01578: Recombinase A |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -206 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BLA_0934: Recombinase A |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -246 score = 5.52699 sequence = TCGAACAGGTGTTCGC Gene: BbifN4_010100006154: Recombinase A |
*
Bifidobacterium breve DSM 20213 Site: position = -157 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BIFBRE_01637: Recombinase A |
*
Bifidobacterium dentium Bd1 Site: position = -235 score = 5.64353 sequence = TCGAACAGATGTTCGT Gene: BDP_1421: Recombinase A |
*
Bifidobacterium gallicum DSM 20093 Site: position = -152 score = 5.73251 sequence = TCGAACATTTGTTCGC Gene: BIFGAL_00191: Recombinase A |
*
Bifidobacterium longum NCC2705 Site: position = -236 score = 5.60255 sequence = TCGAACAAATGTTCGT Gene: BL1415: Recombinase A |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -173 score = 5.64353 sequence = TCGAACAGATGTTCGT Gene: Blon_0949: Recombinase A |
*
Gardnerella vaginalis 409-05 Site: position = -179 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: HMPREF0424_1021: Recombinase A |
Recombinase A |
| recX |
Gene: BAD_1023: Regulatory protein RecX |
Gene: BIFANG_01577: Regulatory protein RecX |
Gene: BLA_0935: Regulatory protein RecX |
Gene: BbifN4_010100006149: Regulatory protein RecX |
Gene: BIFBRE_01635: Regulatory protein RecX |
Gene: BDP_1420: Regulatory protein RecX |
Gene: BIFGAL_00188: Regulatory protein RecX |
Gene: BL1416: Regulatory protein RecX |
Gene: Blon_0950: Regulatory protein RecX |
Gene: HMPREF0424_1020: Regulatory protein RecX |
Regulatory protein RecX |
| CRON 9. | |||||||||||
| lhr |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = 25 score = 5.48018 sequence = TCGAACGTATGTACGA Gene: BAD_1008: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium angulatum DSM 20098 Site: position = -8 score = 5.75928 sequence = TCGAACATATGTACGA Gene: BIFANG_01557: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -8 score = 5.72157 sequence = TCGAACATATGTGCGA Gene: BLA_0950: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -8 score = 5.0695 sequence = TCGAATATATGTACGA Gene: BbifN4_010100006079: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium breve DSM 20213 Site: position = 22 score = 5.72157 sequence = TCGAACATATGTGCGA Gene: BIFBRE_01621: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium dentium Bd1 Site: position = -8 score = 5.48018 sequence = TCGAACGTATGTACGA Gene: BDP_1405: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium gallicum DSM 20093 Site: position = -8 score = 5.03179 sequence = TCGAACATATGAGCGA Gene: BIFGAL_01317: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium longum NCC2705 Site: position = -8 score = 5.23536 sequence = TCGTACATATGTACGA Gene: BL1432: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -8 score = 5.23536 sequence = TCGTACATATGTACGA Gene: Blon_0964: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
|
Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |