Regulog LexA - Bifidobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 97 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Bifidobacteriaceae
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Statistics of regulated genes
Genome	Genes	Operons
Bifidobacterium adolescentis ATCC 15703	11	8
Bifidobacterium angulatum DSM 20098	11	8
Bifidobacterium animalis subsp. lactis AD011	11	9
Bifidobacterium bifidum NCIMB 41171	10	7
Bifidobacterium breve DSM 20213	10	7
Bifidobacterium dentium Bd1	11	9
Bifidobacterium gallicum DSM 20093	8	7
Bifidobacterium longum NCC2705	10	7
Bifidobacterium longum subsp. infantis ATCC 15697	10	7
Gardnerella vaginalis 409-05	9	6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
uvrA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -78 score = 5.63972 sequence = TAGAACACCTGTTCGA Gene: BAD_0840: Excinuclease ABC subunit A	* Bifidobacterium angulatum DSM 20098 Site: position = -82 score = 5.7735 sequence = GCGAACATCTGTTCGA Gene: BIFANG_01450: Excinuclease ABC subunit A	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -88 score = 5.8658 sequence = TCGAACAAGTGTTCGA Gene: BLA_1372: Excinuclease ABC subunit A	* Bifidobacterium bifidum NCIMB 41171 Site: position = -90 score = 5.56034 sequence = TCGAACTGATGTTCGA Gene: BbifN4_010100004854: Excinuclease ABC subunit A	2 Bifidobacterium breve DSM 20213* Site: position = -106 score = 6.03669 sequence = TCGAACATGTGTTCGA Gene: BIFBRE_01317: Excinuclease ABC subunit A Gene: BIFBRE_01318: Excinuclease ABC subunit A	* Bifidobacterium dentium Bd1 Site: position = -82 score = 5.63972 sequence = TCGAACAGGTGTTCTA Gene: BDP_1131: Excinuclease ABC subunit A	* Bifidobacterium gallicum DSM 20093 Site: position = -102 score = 6.03669 sequence = TCGAACATGTGTTCGA Gene: BIFGAL_01593: Excinuclease ABC subunit A	* Bifidobacterium longum NCC2705 Site: position = -102 score = 5.58669 sequence = TCGAACAAGCGTTCGA Gene: BL0702: Excinuclease ABC subunit A	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -204 score = 5.58669 sequence = TCGAACAAGCGTTCGA Gene: Blon_1082: Excinuclease ABC subunit A	* Gardnerella vaginalis 409-05 Site: position = -92 score = 5.59873 sequence = TCGAACACTTGTTCTA Gene: HMPREF0424_0816: Excinuclease ABC subunit A	Excinuclease ABC subunit A
uvrC	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0839: Excinuclease ABC subunit C	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01449: Excinuclease ABC subunit C	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1370: Excinuclease ABC subunit C	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100004849: Excinuclease ABC subunit C	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01319: Excinuclease ABC subunit C	Bifidobacterium dentium Bd1 Gene: BDP_1132: Excinuclease ABC subunit C	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01595: Excinuclease ABC subunit C	Bifidobacterium longum NCC2705 Gene: BL0703: Excinuclease ABC subunit C	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1083: Excinuclease ABC subunit C	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0815: Excinuclease ABC subunit C	Excinuclease ABC subunit C

CRON 2.
ruvA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -41 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BAD_0804: Holliday junction DNA helicase RuvA	* Bifidobacterium angulatum DSM 20098 Site: position = -29 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BIFANG_01367: Holliday junction DNA helicase RuvA	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -33 score = 5.80388 sequence = CCGAACATATGTTCGA Gene: BLA_1342: Holliday junction DNA helicase RuvA	* Bifidobacterium bifidum NCIMB 41171 Site: position = -169 score = 5.40691 sequence = TCGAACAGATGTTCTG Gene: BbifN4_010100004709: Holliday junction DNA helicase RuvA	* Bifidobacterium breve DSM 20213 Site: position = -36 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BIFBRE_01347: Holliday junction DNA helicase RuvA	* Bifidobacterium dentium Bd1 Site: position = -151 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BDP_1176: Holliday junction DNA helicase RuvA	* Bifidobacterium gallicum DSM 20093 Site: position = -125 score = 5.7735 sequence = GCGAACATCTGTTCGA Gene: BIFGAL_01661: Holliday junction DNA helicase RuvA	* Bifidobacterium longum NCC2705 Site: position = -50 score = 5.9824 sequence = TCGAACAGTTGTTCGA Gene: BL0728: Holliday junction DNA helicase RuvA	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -50 score = 6.15329 sequence = TCGAACAGATGTTCGA Gene: Blon_1157: Holliday junction DNA helicase RuvA	* Gardnerella vaginalis 409-05 Site: position = -79 score = 5.61917 sequence = TAGAACAGATGTTCTA Gene: HMPREF0424_0837: Holliday junction DNA helicase RuvA	Holliday junction DNA helicase RuvA
ruvB	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0805: Holliday junction DNA helicase RuvB	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01366: Holliday junction DNA helicase RuvB	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_1341: Holliday junction DNA helicase RuvB	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100004704: Holliday junction DNA helicase RuvB	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01348: Holliday junction DNA helicase RuvB	Bifidobacterium dentium Bd1 Gene: BDP_1175: Holliday junction DNA helicase RuvB	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_01660: Holliday junction DNA helicase RuvB	Bifidobacterium longum NCC2705 Gene: BL0729: Holliday junction DNA helicase RuvB	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1158: Holliday junction DNA helicase RuvB	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0836: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB

CRON 3.
lexA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -8 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -76 score = 5.75632 sequence = TCGAACAGCTGTTCTA Site: position = -60 score = 5.04752 sequence = TCGAACGCTTGTTCCA Site: position = -40 score = 5.18239 sequence = TGGCACATATGTTCGA Gene: BAD_1115: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium angulatum DSM 20098 Site: position = -113 score = 5.88623 sequence = TCGAACATCTGTTCTA Site: position = -97 score = 5.56614 sequence = TCGAACGTTTGTTCTA Site: position = -43 score = 5.66757 sequence = TCGAACAAATGTTTGA Site: position = -77 score = 5.00291 sequence = TTGCACAGATGTTCGA Gene: BIFANG_00990: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -64 score = 5.70856 sequence = TCGAACATCTGTTTGA Site: position = -127 score = 5.84524 sequence = TCGAACAAATGTTCTA Site: position = -94 score = 5.59166 sequence = TCGCACATCTGTTCGA Gene: BLA_0790: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -51 score = 4.87871 sequence = TCGAACGAATGTTTGT Site: position = -105 score = 4.54457 sequence = TAGAACAACTGTACTC Gene: BbifN4_010100002264: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium breve DSM 20213 Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -120 score = 5.37647 sequence = TCGAACATCTGTTCTT Site: position = -100 score = 5.0115 sequence = TGGCACAAATGTTCGA Site: position = -136 score = 5.59873 sequence = TCGAACAAGTGTTCTA Gene: BIFBRE_01804: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium dentium Bd1 Site: position = -286 score = 5.70856 sequence = TCGAACAGATGTTTGA Gene: BDP_1556: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium gallicum DSM 20093 Site: position = -25 score = 5.73251 sequence = TCGAACATTTGTTCGC Site: position = 11 score = 5.55068 sequence = TCGCACATTTGTTCGA Gene: BIFGAL_00302: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium longum NCC2705 Site: position = -120 score = 5.20558 sequence = TCGAACAACTGTTCTT Site: position = -100 score = 4.7324 sequence = TGGCACAAACGTTCGA Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -136 score = 5.88623 sequence = TCGAACAGATGTTCTA Gene: BL1310: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -136 score = 5.88623 sequence = TCGAACAGATGTTCTA Site: position = -120 score = 5.20558 sequence = TCGAACAACTGTTCTT Site: position = -100 score = 5.0115 sequence = TGGCACAAATGTTCGA Site: position = -67 score = 5.70856 sequence = TCGAACAGATGTTTGA Gene: Blon_0842: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Gardnerella vaginalis 409-05 Site: position = -114 score = 4.91758 sequence = TCGAACAGATGTATTA Site: position = -94 score = 4.56677 sequence = TGACACATTTGTTCGA Site: position = -62 score = 5.70856 sequence = TCGAACAGATGTTTGA Site: position = -130 score = 4.77717 sequence = CTGAACATTTGTTCTA Gene: HMPREF0424_0572: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)

CRON 4.
dinP2	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_0303: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium angulatum DSM 20098 Site: position = -47 score = 5.8658 sequence = TCGAACAAGTGTTCGA Gene: BIFANG_00697: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -29 score = 5.08522 sequence = TCGAACATCTGTTCAG Gene: BLA_0349: DNA polymerase IV (EC 2.7.7.7)	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100007692: DNA polymerase IV (EC 2.7.7.7)	Bifidobacterium breve DSM 20213 Gene: BIFBRE_00239: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium dentium Bd1 Site: position = 4 score = 5.16938 sequence = TCGAACATCTGTTTCA Gene: BDP_0412: DNA polymerase IV (EC 2.7.7.7)	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00779: DNA polymerase IV (EC 2.7.7.7)	Bifidobacterium longum NCC2705 Gene: BL1565: DNA polymerase IV (EC 2.7.7.7)	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_2250: DNA polymerase IV (EC 2.7.7.7)	* Gardnerella vaginalis 409-05 Site: position = -107 score = 5.56614 sequence = TCGAACGTTTGTTCTA Gene: HMPREF0424_0243: DNA polymerase IV (EC 2.7.7.7)	DNA polymerase IV (EC 2.7.7.7)

CRON 5.
dinP1	* Bifidobacterium adolescentis ATCC 15703 Site: position = -110 score = 5.74428 sequence = TCGAACAGCCGTTCGA Gene: BAD_0522: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium angulatum DSM 20098 Site: position = -41 score = 6.00409 sequence = TCGAACGTATGTTCGA Gene: BIFANG_00973: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -27 score = 5.8332 sequence = TCGAACGTTTGTTCGA Gene: BLA_1129: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -61 score = 4.61555 sequence = TCGAACATATGTCTCA Gene: BbifN4_010100006359: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium breve DSM 20213 Site: position = -8 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: BIFBRE_00833: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium dentium Bd1 Site: position = -75 score = 5.87419 sequence = TCGAACGGATGTTCGA Gene: BDP_0721: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium gallicum DSM 20093 Site: position = -8 score = 6.2832 sequence = TCGAACATATGTTCGA Gene: BIFGAL_01091: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium longum NCC2705 Site: position = -58 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: BL1114: DNA polymerase IV (EC 2.7.7.7)	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -64 score = 6.1123 sequence = TCGAACAAATGTTCGA Gene: Blon_1951: DNA polymerase IV (EC 2.7.7.7)	Gardnerella vaginalis 409-05	DNA polymerase IV (EC 2.7.7.7)

CRON 6.
rarA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -48 score = 5.75759 sequence = TCGAACGTGTGTTCGA Gene: BAD_0585: Recombination factor protein RarA	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_00995: Recombination factor protein RarA	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -56 score = 6.1123 sequence = TCGAACATTTGTTCGA Gene: BLA_1204: Recombination factor protein RarA	* Bifidobacterium bifidum NCIMB 41171 Site: position = -38 score = 5.61771 sequence = TCGAACCTATGTTCGA Gene: BbifN4_010100002924: Recombination factor protein RarA	* Bifidobacterium breve DSM 20213 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: BIFBRE_00563: Recombination factor protein RarA	* Bifidobacterium dentium Bd1 Site: position = -21 score = 5.75759 sequence = TCGAACGTGTGTTCGA Gene: BDP_0795: Recombination factor protein RarA	* Bifidobacterium gallicum DSM 20093 Site: position = -68 score = 6.2832 sequence = TCGAACATATGTTCGA Gene: BIFGAL_01848: Recombination factor protein RarA	* Bifidobacterium longum NCC2705 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: BL0029: Recombination factor protein RarA	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -39 score = 5.87419 sequence = TCGAACGTCTGTTCGA Gene: Blon_0716: Recombination factor protein RarA	* Gardnerella vaginalis 409-05 Site: position = -38 score = 5.56614 sequence = TCGAACGTTTGTTCTA Gene: HMPREF0424_0826: Recombination factor protein RarA	Recombination factor protein RarA

CRON 7.
uvrB	* Bifidobacterium adolescentis ATCC 15703 Site: position = -87 score = 5.76963 sequence = TAGAACACATGTTCGA Gene: BAD_0676: Excinuclease ABC subunit B	* Bifidobacterium angulatum DSM 20098 Site: position = -80 score = 5.57313 sequence = TGGAACAAATGTTCGA Gene: BIFANG_01139: Excinuclease ABC subunit B	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -67 score = 5.60713 sequence = TAGAACAGACGTTCGA Gene: BLA_1496: Excinuclease ABC subunit B	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100003339: Excinuclease ABC subunit B	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01049: Excinuclease ABC subunit B	* Bifidobacterium dentium Bd1 Site: position = -58 score = 5.73703 sequence = TAGAACGTATGTTCGA Gene: BDP_0902: Excinuclease ABC subunit B	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00355: Excinuclease ABC subunit B	Bifidobacterium longum NCC2705 Gene: BL0990: Excinuclease ABC subunit B	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_1747: Excinuclease ABC subunit B	Gardnerella vaginalis 409-05 Gene: HMPREF0424_0606: Excinuclease ABC subunit B	Excinuclease ABC subunit B

CRON 8.
recA	* Bifidobacterium adolescentis ATCC 15703 Site: position = -190 score = 5.67397 sequence = TCGAACAGATGTTCGG Gene: BAD_1024: Recombinase A	* Bifidobacterium angulatum DSM 20098 Site: position = -229 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BIFANG_01578: Recombinase A	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -206 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BLA_0934: Recombinase A	* Bifidobacterium bifidum NCIMB 41171 Site: position = -246 score = 5.52699 sequence = TCGAACAGGTGTTCGC Gene: BbifN4_010100006154: Recombinase A	* Bifidobacterium breve DSM 20213 Site: position = -157 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: BIFBRE_01637: Recombinase A	* Bifidobacterium dentium Bd1 Site: position = -235 score = 5.64353 sequence = TCGAACAGATGTTCGT Gene: BDP_1421: Recombinase A	* Bifidobacterium gallicum DSM 20093 Site: position = -152 score = 5.73251 sequence = TCGAACATTTGTTCGC Gene: BIFGAL_00191: Recombinase A	* Bifidobacterium longum NCC2705 Site: position = -236 score = 5.60255 sequence = TCGAACAAATGTTCGT Gene: BL1415: Recombinase A	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -173 score = 5.64353 sequence = TCGAACAGATGTTCGT Gene: Blon_0949: Recombinase A	* Gardnerella vaginalis 409-05 Site: position = -179 score = 5.73251 sequence = TCGAACAAATGTTCGC Gene: HMPREF0424_1021: Recombinase A	Recombinase A
recX	Bifidobacterium adolescentis ATCC 15703 Gene: BAD_1023: Regulatory protein RecX	Bifidobacterium angulatum DSM 20098 Gene: BIFANG_01577: Regulatory protein RecX	Bifidobacterium animalis subsp. lactis AD011 Gene: BLA_0935: Regulatory protein RecX	Bifidobacterium bifidum NCIMB 41171 Gene: BbifN4_010100006149: Regulatory protein RecX	Bifidobacterium breve DSM 20213 Gene: BIFBRE_01635: Regulatory protein RecX	Bifidobacterium dentium Bd1 Gene: BDP_1420: Regulatory protein RecX	Bifidobacterium gallicum DSM 20093 Gene: BIFGAL_00188: Regulatory protein RecX	Bifidobacterium longum NCC2705 Gene: BL1416: Regulatory protein RecX	Bifidobacterium longum subsp. infantis ATCC 15697 Gene: Blon_0950: Regulatory protein RecX	Gardnerella vaginalis 409-05 Gene: HMPREF0424_1020: Regulatory protein RecX	Regulatory protein RecX

CRON 9.
lhr	* Bifidobacterium adolescentis ATCC 15703 Site: position = 25 score = 5.48018 sequence = TCGAACGTATGTACGA Gene: BAD_1008: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium angulatum DSM 20098 Site: position = -8 score = 5.75928 sequence = TCGAACATATGTACGA Gene: BIFANG_01557: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium animalis subsp. lactis AD011 Site: position = -8 score = 5.72157 sequence = TCGAACATATGTGCGA Gene: BLA_0950: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium bifidum NCIMB 41171 Site: position = -8 score = 5.0695 sequence = TCGAATATATGTACGA Gene: BbifN4_010100006079: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium breve DSM 20213 Site: position = 22 score = 5.72157 sequence = TCGAACATATGTGCGA Gene: BIFBRE_01621: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium dentium Bd1 Site: position = -8 score = 5.48018 sequence = TCGAACGTATGTACGA Gene: BDP_1405: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium gallicum DSM 20093 Site: position = -8 score = 5.03179 sequence = TCGAACATATGAGCGA Gene: BIFGAL_01317: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium longum NCC2705 Site: position = -8 score = 5.23536 sequence = TCGTACATATGTACGA Gene: BL1432: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	* Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -8 score = 5.23536 sequence = TCGTACATATGTACGA Gene: Blon_0964: Probable ATP-dependent helicase lhr (EC 3.6.1.-)	Gardnerella vaginalis 409-05	Probable ATP-dependent helicase lhr (EC 3.6.1.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LexA - Bifidobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --