Regulon of LexA in Bifidobacterium bifidum NCIMB 41171
| Regulator type: | Transcription factor |
| TF locus tag: | BbifN4_010100002264 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Bifidobacteriaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -90
Score: 5.6 Sequence: TCGAACTGATGTTCGA
Locus tag: BbifN4_010100004854
Name: uvrA Funciton: Excinuclease ABC subunit A
Locus tag: BbifN4_010100004849
Name: uvrC Funciton: Excinuclease ABC subunit C |
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uvrA
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Excinuclease ABC subunit A
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uvrC
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Excinuclease ABC subunit C
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Position: -105
Score: 4.5 Sequence: TAGAACAACTGTACTC
Position: -51
Score: 4.9 Sequence: TCGAACGAATGTTTGT
Locus tag: BbifN4_010100002264
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -169
Score: 5.4 Sequence: TCGAACAGATGTTCTG
Locus tag: BbifN4_010100004709
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: BbifN4_010100004704
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -8
Score: 5.1 Sequence: TCGAATATATGTACGA
Locus tag: BbifN4_010100006079
Name: lhr Funciton: Probable ATP-dependent helicase lhr (EC 3.6.1.-) |
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lhr
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Probable ATP-dependent helicase lhr (EC 3.6.1.-)
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Position: -246
Score: 5.5 Sequence: TCGAACAGGTGTTCGC
Locus tag: BbifN4_010100006154
Name: recA Funciton: Recombinase A
Locus tag: BbifN4_010100006149
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -61
Score: 4.6 Sequence: TCGAACATATGTCTCA
Locus tag: BbifN4_010100006359
Name: dinP1 Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinP1
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DNA polymerase IV (EC 2.7.7.7)
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Position: -38
Score: 5.6 Sequence: TCGAACCTATGTTCGA
Locus tag: BbifN4_010100002924
Name: rarA Funciton: Recombination factor protein RarA |
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rarA
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Recombination factor protein RarA
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |