Regulon of LexA in Gardnerella vaginalis 409-05

Properties
Regulator type:	Transcription factor
TF locus tag:	HMPREF0424_0572
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Bifidobacteriaceae
Statistics of regulated genes:
- Genes	9
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 97 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Bifidobacteriaceae
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -107 Score: 5.6 Sequence: TCGAACGTTTGTTCTA Locus tag: HMPREF0424_0243 Name: dinP2 Funciton: DNA polymerase IV (EC 2.7.7.7)
	HMPREF0424_0243	dinP2	DNA polymerase IV (EC 2.7.7.7)
Position: -130 Score: 4.8 Sequence: CTGAACATTTGTTCTA Position: -114 Score: 4.9 Sequence: TCGAACAGATGTATTA Position: -94 Score: 4.6 Sequence: TGACACATTTGTTCGA Position: -62 Score: 5.7 Sequence: TCGAACAGATGTTTGA Locus tag: HMPREF0424_0572 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	HMPREF0424_0572	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -179 Score: 5.7 Sequence: TCGAACAAATGTTCGC Locus tag: HMPREF0424_1021 Name: recA Funciton: Recombinase A Locus tag: HMPREF0424_1020 Name: recX Funciton: Regulatory protein RecX
	HMPREF0424_1021	recA	Recombinase A
	HMPREF0424_1020	recX	Regulatory protein RecX
Position: -92 Score: 5.6 Sequence: TCGAACACTTGTTCTA Locus tag: HMPREF0424_0816 Name: uvrA Funciton: Excinuclease ABC subunit A Locus tag: HMPREF0424_0815 Name: uvrC Funciton: Excinuclease ABC subunit C
	HMPREF0424_0816	uvrA	Excinuclease ABC subunit A
	HMPREF0424_0815	uvrC	Excinuclease ABC subunit C
Position: -79 Score: 5.6 Sequence: TAGAACAGATGTTCTA Locus tag: HMPREF0424_0837 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: HMPREF0424_0836 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	HMPREF0424_0837	ruvA	Holliday junction DNA helicase RuvA
	HMPREF0424_0836	ruvB	Holliday junction DNA helicase RuvB
Position: -38 Score: 5.6 Sequence: TCGAACGTTTGTTCTA Locus tag: HMPREF0424_0826 Name: rarA Funciton: Recombination factor protein RarA
	HMPREF0424_0826	rarA	Recombination factor protein RarA

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD