Regulog Zur - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 40 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By trascription factor - Zur
By TF family - FUR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	7	4
Arthrobacter chlorophenolicus A6	8	3
Arthrobacter sp. FB24	6	3
Beutenbergia cavernae DSM 12333	5	2
Brachybacterium faecium DSM 4810	5	2
Brevibacterium linens BL2	7	5
Clavibacter michiganensis subsp. michiganensis NCPPB 382	11	5
Janibacter sp. HTCC2649	4	1
Jonesia denitrificans DSM 20603	5	2
Kocuria rhizophila DC2201	3	1
Kytococcus sedentarius DSM 20547	4	1
Leifsonia xyli subsp. xyli str. CTCB07	5	2
Renibacterium salmoninarum ATCC 33209	7	4
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
znuA	* Arthrobacter aurescens TC1 Site: position = -2 score = 4.2062 sequence = AATTGTGTTTGATTCTCATTT Gene: AAur_2632: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Arthrobacter chlorophenolicus A6 Site: position = -73 score = 4.73673 sequence = AAATAGGAATGATTCCCATTT Gene: Achl_2376: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Arthrobacter sp. FB24 Site: position = -98 score = 4.38296 sequence = AAATAGGAATGATTCCTATTT Site: position = -55 score = 4.45671 sequence = TAATGCTCCTGATTCTCATGT Gene: Arth_2641: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Beutenbergia cavernae DSM 12333 Site: position = -39 score = 4.63486 sequence = TTTTGACATCGGTTCTCATCT Gene: Bcav_1775: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Brachybacterium faecium DSM 4810 Site: position = -8 score = 4.83483 sequence = TGGTGAGAATGATTGTCATGT Gene: Bfae_17080: Zinc ABC transporter, periplasmic-binding protein ZnuA	Brevibacterium linens BL2 Gene: BlinB01001749: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -37 score = 5.49082 sequence = TAGTGAGACTGGTTATCAATA Gene: CMM_2941: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Janibacter sp. HTCC2649 Site: position = -39 score = 5.04525 sequence = AGTTGACAATCATTCTCAACT Site: position = -17 score = 5.20393 sequence = AGTTGAGAATGATTGTCATGA Gene: JNB_04825: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Jonesia denitrificans DSM 20603 Site: position = -8 score = 5.49958 sequence = TATTGATAATGGATCTCATGA Gene: Jden_1533: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Kocuria rhizophila DC2201 Site: position = -100 score = 4.56222 sequence = AGATGAGAATGGTTAGTGATA Site: position = -63 score = 4.7101 sequence = TGATGACACTGATTCTCATCG Gene: KRH_09480: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Kytococcus sedentarius DSM 20547 Site: position = -17 score = 4.1794 sequence = ACCTGAGAATCATTGTCATGC Gene: Ksed_11830: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -86 score = 5.41821 sequence = TTTTGACAATCATTATCAACA Gene: Lxx25040: Zinc ABC transporter, periplasmic-binding protein ZnuA	* Renibacterium salmoninarum ATCC 33209 Site: position = -62 score = 4.41685 sequence = TGTTGCACATCATTCTCGATA Site: position = -103 score = 4.48063 sequence = TTATGCGAATGATTCCGATTA Gene: RSal33209_1398: Zinc ABC transporter, periplasmic-binding protein ZnuA	Tropheryma whipplei str. Twist	Zinc ABC transporter, periplasmic-binding protein ZnuA
znuC	Arthrobacter aurescens TC1 Gene: AAur_2631: Zinc ABC transporter, ATP-binding protein ZnuC	Arthrobacter chlorophenolicus A6 Gene: Achl_2375: Zinc ABC transporter, ATP-binding protein ZnuC	Arthrobacter sp. FB24 Gene: Arth_2640: Zinc ABC transporter, ATP-binding protein ZnuC	Beutenbergia cavernae DSM 12333 Gene: Bcav_1774: Zinc ABC transporter, ATP-binding protein ZnuC	Brachybacterium faecium DSM 4810 Gene: Bfae_17090: Zinc ABC transporter, ATP-binding protein ZnuC	Brevibacterium linens BL2 Gene: BlinB01001750: Zinc ABC transporter, ATP-binding protein ZnuC	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_2940: Zinc ABC transporter, ATP-binding protein ZnuC	Janibacter sp. HTCC2649 Gene: JNB_04830: Zinc ABC transporter, ATP-binding protein ZnuC	Jonesia denitrificans DSM 20603 Gene: Jden_1534: Zinc ABC transporter, ATP-binding protein ZnuC	Kocuria rhizophila DC2201 Gene: KRH_09490: Zinc ABC transporter, ATP-binding protein ZnuC	Kytococcus sedentarius DSM 20547 Gene: Ksed_11820: Zinc ABC transporter, ATP-binding protein ZnuC	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx25025: Zinc ABC transporter, ATP-binding protein ZnuC	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1399: Zinc ABC transporter, ATP-binding protein ZnuC	Tropheryma whipplei str. Twist	Zinc ABC transporter, ATP-binding protein ZnuC
znuB	Arthrobacter aurescens TC1 Gene: AAur_2629: Zinc ABC transporter, inner membrane permease protein ZnuB	Arthrobacter chlorophenolicus A6 Gene: Achl_2374: Zinc ABC transporter, inner membrane permease protein ZnuB	Arthrobacter sp. FB24 Gene: Arth_2639: Zinc ABC transporter, inner membrane permease protein ZnuB	Beutenbergia cavernae DSM 12333 Gene: Bcav_1773: Zinc ABC transporter, inner membrane permease protein ZnuB	Brachybacterium faecium DSM 4810 Gene: Bfae_17100: Zinc ABC transporter, inner membrane permease protein ZnuB	Brevibacterium linens BL2 Gene: BlinB01001751: Zinc ABC transporter, inner membrane permease protein ZnuB	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_2939: Zinc ABC transporter, inner membrane permease protein ZnuB	Janibacter sp. HTCC2649 Gene: JNB_04835: Zinc ABC transporter, inner membrane permease protein ZnuB	Jonesia denitrificans DSM 20603 Gene: Jden_1535: Zinc ABC transporter, inner membrane permease protein ZnuB	Kocuria rhizophila DC2201 Gene: KRH_09500: Zinc ABC transporter, inner membrane permease protein ZnuB	Kytococcus sedentarius DSM 20547 Gene: Ksed_11810: Zinc ABC transporter, inner membrane permease protein ZnuB	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx25020: Zinc ABC transporter, inner membrane permease protein ZnuB	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1400: Zinc ABC transporter, inner membrane permease protein ZnuB	Tropheryma whipplei str. Twist	Zinc ABC transporter, inner membrane permease protein ZnuB
zur	Arthrobacter aurescens TC1 Gene: AAur_2630: Zinc homeostasis transcriptional regulator Zur, Fur family	Arthrobacter chlorophenolicus A6 Gene: Achl_2373: Zinc homeostasis transcriptional regulator Zur, Fur family	Arthrobacter sp. FB24 Gene: Arth_2638: Zinc homeostasis transcriptional regulator Zur, Fur family	Beutenbergia cavernae DSM 12333 Gene: Bcav_1772: Zinc homeostasis transcriptional regulator Zur, Fur family	Brachybacterium faecium DSM 4810 Gene: Bfae_17110: Zinc homeostasis transcriptional regulator Zur, Fur family	* Brevibacterium linens BL2 Site: position = -94 score = 5.00875 sequence = TAATGGTAACGTTTTTCATTA Gene: BlinB01002696: Zinc homeostasis transcriptional regulator Zur, Fur family	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_2938: Zinc homeostasis transcriptional regulator Zur, Fur family	Janibacter sp. HTCC2649 Gene: JNB_04840: Zinc homeostasis transcriptional regulator Zur, Fur family	Jonesia denitrificans DSM 20603 Gene: Jden_1536: Zinc homeostasis transcriptional regulator Zur, Fur family	Kocuria rhizophila DC2201 Gene: KRH_09520: Zinc homeostasis transcriptional regulator Zur, Fur family	Kytococcus sedentarius DSM 20547 Gene: Ksed_11800: Zinc homeostasis transcriptional regulator Zur, Fur family	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx25010: Zinc homeostasis transcriptional regulator Zur, Fur family	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1401: Zinc homeostasis transcriptional regulator Zur, Fur family	Tropheryma whipplei str. Twist	Zinc homeostasis transcriptional regulator Zur, Fur family

CRON 2.
RSal33209_0614	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	* Renibacterium salmoninarum ATCC 33209 Site: position = -39 score = 5.72178 sequence = TAATGATCATGATGATCATTA Gene: RSal33209_0614: NADH-FMN oxidoreductase	Tropheryma whipplei str. Twist	NADH-FMN oxidoreductase

CRON 3.
RSal33209_0615	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	* Renibacterium salmoninarum ATCC 33209 Site: position = -109 score = 5.72178 sequence = TAATGATCATCATGATCATTA Gene: RSal33209_0615: transcriptional regulator, GntR family	Tropheryma whipplei str. Twist	transcriptional regulator, GntR family

CRON 4.
znuB2	* Arthrobacter aurescens TC1 Site: position = -2 score = 5.54117 sequence = TTTTGATAATGAATCTCAATA Gene: AAur_1962: Zinc ABC transporter, inner membrane permease protein ZnuB	* Arthrobacter chlorophenolicus A6 Site: position = -37 score = 5.82644 sequence = TGTTGATAATGATTCTTATTA Gene: Achl_2858: Zinc ABC transporter, inner membrane permease protein ZnuB	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	* Brevibacterium linens BL2 Site: position = -25 score = 5.45335 sequence = TAACAATAATGGTTATCATCA Gene: BlinB01002692: Zinc ABC transporter, inner membrane permease protein ZnuB	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -40 score = 4.99115 sequence = AGTTGATAAGCATTCTCATTC Gene: CMM_0175: Zinc ABC transporter, inner membrane permease protein ZnuB	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Zinc ABC transporter, inner membrane permease protein ZnuB
COG1520	Arthrobacter aurescens TC1 Gene: AAur_1963: WD40/YVTN repeat-like-containing domain	Arthrobacter chlorophenolicus A6 Gene: Achl_2857: WD40/YVTN repeat-like-containing domain	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	* Brevibacterium linens BL2 Site: position = -31 score = 5.85923 sequence = CAATGAGAACCATTATCAATA Gene: BlinB01002691: WD40/YVTN repeat-like-containing domain	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0176: WD40/YVTN repeat-like-containing domain	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	WD40/YVTN repeat-like-containing domain
znuA2	Arthrobacter aurescens TC1 Gene: AAur_1964: Zinc ABC transporter, periplasmic-binding protein ZnuA	Arthrobacter chlorophenolicus A6 Gene: Achl_2856: Zinc ABC transporter, periplasmic-binding protein ZnuA	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2 Gene: BlinB01002690: Zinc ABC transporter, periplasmic-binding protein ZnuA	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0177: Zinc ABC transporter, periplasmic-binding protein ZnuA	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_3501: Zinc ABC transporter, periplasmic-binding protein ZnuA	Tropheryma whipplei str. Twist	Zinc ABC transporter, periplasmic-binding protein ZnuA
AAur_1965	Arthrobacter aurescens TC1 Gene: AAur_1965: WD40/YVTN repeat-like-containing domain	Arthrobacter chlorophenolicus A6 Gene: Achl_2855: WD40/YVTN repeat-like-containing domain	* Arthrobacter sp. FB24 Site: position = -26 score = 5.77057 sequence = TAATGAGAATGACTATCATTT Gene: Arth_4108: WD40/YVTN repeat-like-containing domain	* Beutenbergia cavernae DSM 12333 Site: position = -68 score = 5.08085 sequence = GAATGAGAATGACTCTCGTTA Gene: Bcav_0090: WD40/YVTN repeat-like-containing domain	* Brachybacterium faecium DSM 4810 Site: position = -62 score = 4.96513 sequence = AGATGCGAACGATTATCAGTA Site: position = -17 score = 5.38419 sequence = TGATGAGAACGGTTTTCATGA Gene: Bfae_30770: WD40/YVTN repeat-like-containing domain	Brevibacterium linens BL2 Gene: BlinB01002689: WD40/YVTN repeat-like-containing domain	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_0178: WD40/YVTN repeat-like-containing domain	Janibacter sp. HTCC2649	* Jonesia denitrificans DSM 20603 Site: position = -30 score = 5.54463 sequence = TATTGATAATCGTTCCCAGTA Gene: Jden_1380: WD40/YVTN repeat-like-containing domain	2 Kocuria rhizophila DC2201 Gene: KRH_00830: WD40/YVTN repeat-like-containing domain Gene: KRH_00820: WD40/YVTN repeat-like-containing domain	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_3218: WD40/YVTN repeat-like-containing domain	Tropheryma whipplei str. Twist	WD40/YVTN repeat-like-containing domain

CRON 5.
znuC2	* Arthrobacter aurescens TC1 Site: position = 23 score = 5.54117 sequence = TATTGAGATTCATTATCAAAA Gene: AAur_1961: Zinc ABC transporter, ATP-binding protein ZnuC	* Arthrobacter chlorophenolicus A6 Site: position = -31 score = 5.82644 sequence = TAATAAGAATCATTATCAACA Gene: Achl_2859: Zinc ABC transporter, ATP-binding protein ZnuC	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	* Brevibacterium linens BL2 Site: position = -25 score = 5.45335 sequence = TGATGATAACCATTATTGTTA Gene: BlinB01002693: Zinc ABC transporter, ATP-binding protein ZnuC	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Zinc ABC transporter, ATP-binding protein ZnuC

CRON 6.
yciC	* Arthrobacter aurescens TC1 Site: position = -118 score = 6.00054 sequence = TATTGAGAATGCTTCTCAATA Gene: AAur_2880: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Arthrobacter chlorophenolicus A6	* Arthrobacter sp. FB24 Site: position = -2 score = 5.6669 sequence = AAATGAGAATGATTCTCATAT Gene: Arth_3252: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	* Renibacterium salmoninarum ATCC 33209 Site: position = -33 score = 5.01537 sequence = AAATGAGAATCATTCGCATGT Gene: RSal33209_1680: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Tropheryma whipplei str. Twist	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
rpmJ2	Arthrobacter aurescens TC1 Gene: AAur_2879: LSU ribosomal protein L36p	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24 Gene: Arth_3254: LSU ribosomal protein L36p	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -34 score = 5.60127 sequence = TATTGAGAACCGTTCTCGTGA Gene: CMM_0025: LSU ribosomal protein L36p	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603 Gene: Jden_0071: LSU ribosomal protein L36p	Kocuria rhizophila DC2201 Gene: KRH_23160: LSU ribosomal protein L36p	Kytococcus sedentarius DSM 20547	* Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -34 score = 5.56 sequence = TAATGATAATCTTTCTCAGTA Gene: Lxx20595: LSU ribosomal protein L36p	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_1679: LSU ribosomal protein L36p	Tropheryma whipplei str. Twist	LSU ribosomal protein L36p

CRON 7.
yciC2	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	* Brevibacterium linens BL2 Site: position = -56 score = 5.55453 sequence = TATTGAGAACGAGTATTATTA Gene: BlinB01002697: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	2 Clavibacter michiganensis subsp. michiganensis NCPPB 382* Site: position = -32 score = 4.82981 sequence = AGATGAGAACGGTTCTCTTCT Gene: CMM_0314: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family Site: position = -31 score = 5.60127 sequence = TCACGAGAACGGTTCTCAATA Gene: CMM_0026: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201 Gene: KRH_17280: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Zur - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --