Regulog LiuR - Sphingomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Sphingomonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Erythrobacter litoralis HTCC2594	15	7
Erythrobacter sp. NAP1	19	9
Novosphingobium aromaticivorans DSM 12444	9	5
Sphingopyxis alaskensis RB2256	34	18
Sphingobium japonicum UT26S	6	4
Sphingomonas wittichii RW1	1	1
Zymomonas mobilis subsp. mobilis ZM4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
liuR	* Erythrobacter litoralis HTCC2594 Site: position = -37 score = 5.27086 sequence = CTTGACCTTTACGTAAAG Site: position = -31 score = 4.68921 sequence = CTTTACGTAAAGGGCATG Gene: ELI_05890: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Erythrobacter sp. NAP1 Site: position = -30 score = 5.37222 sequence = GTTCACGTAAAGGTAAAG Site: position = -36 score = 5.75913 sequence = CTTGACGTTCACGTAAAG Gene: NAP1_05180: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Novosphingobium aromaticivorans DSM 12444 Site: position = -37 score = 5.01269 sequence = ATTGACGCTTACGTAAGG Site: position = -31 score = 4.50571 sequence = GCTTACGTAAGGGGCAGG Gene: Saro_2106: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Sphingopyxis alaskensis RB2256 Site: position = -1 score = 5.32683 sequence = ATTGACGTTCACGTCAAC Site: position = 5 score = 5.26614 sequence = GTTCACGTCAACGGAAAC Gene: Sala_1538: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Sphingobium japonicum UT26S Site: position = -37 score = 6.10613 sequence = CTTGACGTAAACGTAAAG Gene: SJA_C1-09700: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Sphingomonas wittichii RW1 Gene: Swit_0576: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Zymomonas mobilis subsp. mobilis ZM4	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
acdH	Erythrobacter litoralis HTCC2594 Gene: ELI_05895: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Erythrobacter sp. NAP1 Gene: NAP1_05185: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2105: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sphingopyxis alaskensis RB2256 Gene: Sala_1537: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sphingobium japonicum UT26S Gene: SJA_C1-09690: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 2.
Sala_0379	Erythrobacter litoralis HTCC2594 Gene: ELI_14570: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	Erythrobacter sp. NAP1 Gene: NAP1_11598: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -41 score = 6.0054 sequence = CTTGACGTTAACGTCAAC Gene: Sala_0379: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	Sphingobium japonicum UT26S Gene: SJA_C1-02010: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)

CRON 3.
etfD	Erythrobacter litoralis HTCC2594 Gene: ELI_06930: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Erythrobacter sp. NAP1 Gene: NAP1_06170: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1781: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Sphingopyxis alaskensis RB2256 Site: position = -99 score = 4.74627 sequence = GTTGACGGGCGCGTCAAT Gene: Sala_1185: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Sphingobium japonicum UT26S Gene: SJA_C1-17330: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Sphingomonas wittichii RW1 Site: position = -90 score = 4.69331 sequence = GTTGACGAAGGCGTCAAT Gene: Swit_4100: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1184: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

CRON 4.
acdH4	Erythrobacter litoralis HTCC2594 Gene: ELI_09620: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Erythrobacter sp. NAP1 Gene: NAP1_10047: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0996: Acyl-CoA dehydrogenase (EC 1.3.99.3)	* Sphingopyxis alaskensis RB2256 Site: position = -34 score = 5.96959 sequence = GTTTACGTGAACGTAAAG Site: position = -28 score = 4.44539 sequence = GTGAACGTAAAGGGAAAG Gene: Sala_3074: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sphingobium japonicum UT26S Gene: SJA_C2-02830: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Sala_3073	Erythrobacter litoralis HTCC2594 Gene: ELI_09625: Alcohol dehydrogenase (EC 1.1.1.1)	Erythrobacter sp. NAP1 Gene: NAP1_10052: Alcohol dehydrogenase (EC 1.1.1.1)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0995: Alcohol dehydrogenase (EC 1.1.1.1)	Sphingopyxis alaskensis RB2256 Gene: Sala_3073: Alcohol dehydrogenase (EC 1.1.1.1)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Alcohol dehydrogenase (EC 1.1.1.1)
Sala_3072	Erythrobacter litoralis HTCC2594 Gene: ELI_09630: Predicted aminoglycoside phosphotransferase	Erythrobacter sp. NAP1 Gene: NAP1_10057: Predicted aminoglycoside phosphotransferase	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0994: Predicted aminoglycoside phosphotransferase	Sphingopyxis alaskensis RB2256 Gene: Sala_3072: Predicted aminoglycoside phosphotransferase	Sphingobium japonicum UT26S Gene: SJA_C2-02820: Predicted aminoglycoside phosphotransferase	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Predicted aminoglycoside phosphotransferase
Sala_0761	Erythrobacter litoralis HTCC2594 Gene: ELI_11495: Bll4978 protein	Erythrobacter sp. NAP1 Gene: NAP1_14648: Bll4978 protein	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0147: Bll4978 protein	* Sphingopyxis alaskensis RB2256 Site: position = -23 score = 4.78959 sequence = GTTTACGTAAAGGGAGAG Site: position = -29 score = 5.9536 sequence = CTTGACGTTTACGTAAAG Gene: Sala_0761: Bll4978 protein	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Bll4978 protein
Saro_0871	Erythrobacter litoralis HTCC2594 Gene: ELI_10140: TesB-like acyl-CoA thioesterase 1	2 Erythrobacter sp. NAP1 Gene: NAP1_10643: TesB-like acyl-CoA thioesterase 1 Gene: NAP1_08055: TesB-like acyl-CoA thioesterase 1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_0760: TesB-like acyl-CoA thioesterase 1	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	TesB-like acyl-CoA thioesterase 1

CRON 5.
acdH3	Erythrobacter litoralis HTCC2594 Gene: ELI_00060: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Erythrobacter sp. NAP1 Gene: NAP1_09237: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_0132: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Sphingopyxis alaskensis RB2256 Site: position = -87 score = 5.45983 sequence = GTGGACGTAAACGTAAGG Site: position = -93 score = 5.44474 sequence = CTTGACGTGGACGTAAAC Gene: Sala_3159: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_1764: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
acdA3	* Erythrobacter litoralis HTCC2594 Site: position = -58 score = 5.64971 sequence = GTTGACGCAAACGTAAGG Gene: ELI_01475: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	* Erythrobacter sp. NAP1 Site: position = -32 score = 5.3468 sequence = GTTTACGTAAACGGGAAG Gene: NAP1_00605: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1069: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sphingopyxis alaskensis RB2256 Gene: Sala_3158: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sphingobium japonicum UT26S Gene: SJA_C2-03860: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sphingomonas wittichii RW1 Gene: Swit_1006: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Zymomonas mobilis subsp. mobilis ZM4	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Sala_3157	Erythrobacter litoralis HTCC2594 Gene: ELI_01480: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Erythrobacter sp. NAP1 Gene: NAP1_00610: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1070: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Sphingopyxis alaskensis RB2256 Gene: Sala_3157: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Sphingobium japonicum UT26S	3 Sphingomonas wittichii RW1 Gene: Swit_1009: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Gene: Swit_1602: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Gene: Swit_1772: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Zymomonas mobilis subsp. mobilis ZM4	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sala_3156	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_3156: putative 4-hydroxybenzoyl-CoA thioesterase	Sphingobium japonicum UT26S Gene: SJA_C1-08110: putative 4-hydroxybenzoyl-CoA thioesterase	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	putative 4-hydroxybenzoyl-CoA thioesterase
fpr	Erythrobacter litoralis HTCC2594	* Erythrobacter sp. NAP1 Site: position = -60 score = 4.93303 sequence = GTTGACGGACACGTCACC Gene: NAP1_09247: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1032: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Sphingobium japonicum UT26S Gene: SJA_C1-10850: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Sphingomonas wittichii RW1 Gene: Swit_0104: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1753: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
NAP1_09242	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1 Gene: NAP1_09242: hypothetical protein	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	hypothetical protein
acdB4	Erythrobacter litoralis HTCC2594 Gene: ELI_01485: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Erythrobacter sp. NAP1 Gene: NAP1_00635: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1071: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	* Sphingopyxis alaskensis RB2256 Site: position = -75 score = 5.61654 sequence = CCTTACGTTTACGTAAAG Gene: Sala_0583: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Sphingobium japonicum UT26S	2 Sphingomonas wittichii RW1 Gene: Swit_1011: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) Gene: Swit_2021: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
acdA	* Erythrobacter litoralis HTCC2594 Site: position = -73 score = 5.7313 sequence = GTTGACGTTTTCGTAAAG Gene: ELI_00050: Enoyl-CoA hydratase (EC 4.2.1.17)	* Erythrobacter sp. NAP1 Site: position = -90 score = 5.60564 sequence = GTTGACGTATCCGTAAAG Gene: NAP1_15378: Enoyl-CoA hydratase (EC 4.2.1.17)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1283: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase (EC 4.2.1.17)
ELI_00055	Erythrobacter litoralis HTCC2594 Gene: ELI_00055: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2045: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	Sphingopyxis alaskensis RB2256 Gene: Sala_1242: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	Sphingobium japonicum UT26S Gene: SJA_C2-03980: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	Sphingomonas wittichii RW1 Gene: Swit_1734: Alpha-methylacyl-CoA racemase (EC 5.1.99.4)	Zymomonas mobilis subsp. mobilis ZM4	Alpha-methylacyl-CoA racemase (EC 5.1.99.4)
NAP1_15373	Erythrobacter litoralis HTCC2594 Gene: ELI_11075: Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Erythrobacter sp. NAP1 Gene: NAP1_15373: Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_1998: Butyryl-CoA dehydrogenase (EC 1.3.99.2)	Zymomonas mobilis subsp. mobilis ZM4	Butyryl-CoA dehydrogenase (EC 1.3.99.2)

CRON 6.
acdB3	Erythrobacter litoralis HTCC2594 Gene: ELI_04900: Enoyl-CoA hydratase (EC 4.2.1.17)	Erythrobacter sp. NAP1 Gene: NAP1_04055: Enoyl-CoA hydratase (EC 4.2.1.17)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1897: Enoyl-CoA hydratase (EC 4.2.1.17)	* Sphingopyxis alaskensis RB2256 Site: position = -41 score = 4.81386 sequence = GTGAACGTAAAGGTAAAG Site: position = -47 score = 5.85227 sequence = CTTTACGTGAACGTAAAG Gene: Sala_1487: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingobium japonicum UT26S Gene: SJA_C2-03900: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingomonas wittichii RW1 Gene: Swit_1999: Enoyl-CoA hydratase (EC 4.2.1.17)	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase (EC 4.2.1.17)

CRON 7.
Sala_0922	Erythrobacter litoralis HTCC2594 Gene: ELI_05445: 2-nitropropane dioxygenase family protein	Erythrobacter sp. NAP1 Gene: NAP1_04665: 2-nitropropane dioxygenase family protein	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2269: 2-nitropropane dioxygenase family protein	* Sphingopyxis alaskensis RB2256 Site: position = -44 score = 5.05671 sequence = GCTTACGTTAAGGTCAAT Site: position = -50 score = 4.40566 sequence = CTTTCCGCTTACGTTAAG Gene: Sala_0922: 2-nitropropane dioxygenase family protein	2 Sphingobium japonicum UT26S Gene: SJA_C1-21850: 2-nitropropane dioxygenase family protein Gene: SJA_C1-32700: 2-nitropropane dioxygenase family protein	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	2-nitropropane dioxygenase family protein

CRON 8.
Sala_1639	Erythrobacter litoralis HTCC2594 Gene: ELI_05950: MoxR-like ATPases	Erythrobacter sp. NAP1 Gene: NAP1_05250: MoxR-like ATPases	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2090: MoxR-like ATPases	* Sphingopyxis alaskensis RB2256 Site: position = -35 score = 5.15399 sequence = CTTGACGTTCACGTTAAG Site: position = -29 score = 4.96815 sequence = GTTCACGTTAAGGGAAAG Gene: Sala_1639: MoxR-like ATPases	Sphingobium japonicum UT26S Gene: SJA_C1-14310: MoxR-like ATPases	Sphingomonas wittichii RW1 Gene: Swit_2638: MoxR-like ATPases	Zymomonas mobilis subsp. mobilis ZM4	MoxR-like ATPases

CRON 9.
acdB2	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -54 score = 6.15832 sequence = GTTGACGTAAACGTCAAC Gene: Sala_1808: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase (EC 4.2.1.17)
acdA2	Erythrobacter litoralis HTCC2594 Gene: ELI_00285: Acetyl-CoA acetyltransferase	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1809: Acetyl-CoA acetyltransferase	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acetyl-CoA acetyltransferase

CRON 10.
Sala_1854	Erythrobacter litoralis HTCC2594 Gene: ELI_09905: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Erythrobacter sp. NAP1 Gene: NAP1_10308: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2593: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	* Sphingopyxis alaskensis RB2256 Site: position = -36 score = 4.85347 sequence = CATGACGTTTCCGTCAAC Site: position = -30 score = 5.22291 sequence = GTTTCCGTCAACGTAAGC Gene: Sala_1854: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)

CRON 11.
acdL2	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1 Gene: NAP1_09632: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -64 score = 5.40297 sequence = CTTGCCGTTTACGTAAAG Site: position = -58 score = 5.06809 sequence = GTTTACGTAAAGGTGAGC Gene: Sala_1104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdH2	Erythrobacter litoralis HTCC2594 Gene: ELI_09235: Acyl-CoA dehydrogenase family protein	2 Erythrobacter sp. NAP1 Gene: NAP1_00170: Acyl-CoA dehydrogenase family protein Gene: NAP1_09627: Acyl-CoA dehydrogenase family protein	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1105: Acyl-CoA dehydrogenase family protein	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase family protein

CRON 12.
acdH5	Erythrobacter litoralis HTCC2594 Gene: ELI_11490: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -36 score = 5.88846 sequence = CTTGACGTTTACGTCAAC Gene: Sala_2313: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

CRON 13.
ELI_08825	* Erythrobacter litoralis HTCC2594 Site: position = -71 score = 5.05701 sequence = GTTGACGGGCGCGTAAAG Gene: ELI_08825: Possible 3-oxo-(Acyl) acyl carrier protein reductase	* Erythrobacter sp. NAP1 Site: position = -70 score = 5.38411 sequence = GTTTACGCGAGCGTAAAG Gene: NAP1_08185: Possible 3-oxo-(Acyl) acyl carrier protein reductase	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2673: Possible 3-oxo-(Acyl) acyl carrier protein reductase	Sphingopyxis alaskensis RB2256 Gene: Sala_0531: Possible 3-oxo-(Acyl) acyl carrier protein reductase	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Possible 3-oxo-(Acyl) acyl carrier protein reductase

CRON 14.
Saro_1064	Erythrobacter litoralis HTCC2594 Gene: ELI_02555: Acyl-CoA thioesterase II (EC 3.1.2.-)	* Erythrobacter sp. NAP1 Site: position = -37 score = 5.57275 sequence = CTTGACGTTTGCGTAAGC Gene: NAP1_01850: Acyl-CoA thioesterase II (EC 3.1.2.-)	* Novosphingobium aromaticivorans DSM 12444 Site: position = -36 score = 5.20666 sequence = GTTGACGTAAACGGGAGC Gene: Saro_1064: Acyl-CoA thioesterase II (EC 3.1.2.-)	Sphingopyxis alaskensis RB2256 Gene: Sala_1443: Acyl-CoA thioesterase II (EC 3.1.2.-)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_2248: Acyl-CoA thioesterase II (EC 3.1.2.-)	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA thioesterase II (EC 3.1.2.-)

CRON 15.
fadA	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256	* Sphingobium japonicum UT26S Site: position = -66 score = 5.87827 sequence = CTTTACGTAAACGTAAAT Gene: SJA_C1-20790: acetyl-CoA acyltransferase	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	acetyl-CoA acyltransferase
fadB	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S Gene: SJA_C1-20800: 3-hydroxyacyl-CoA dehydrogenase	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	3-hydroxyacyl-CoA dehydrogenase

CRON 16.
Sala_0297	Erythrobacter litoralis HTCC2594 Gene: ELI_14560: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2792: Gluconate 5-dehydrogenase (EC 1.1.1.69)	* Sphingopyxis alaskensis RB2256 Site: position = -56 score = 5.91271 sequence = GTTGACGTAAACGTCAAT Gene: Sala_0297: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_0996: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Zymomonas mobilis subsp. mobilis ZM4	Gluconate 5-dehydrogenase (EC 1.1.1.69)
acdB5	Erythrobacter litoralis HTCC2594 Gene: ELI_07190: Enoyl-CoA hydratase (EC 4.2.1.17)	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1741: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingopyxis alaskensis RB2256 Gene: Sala_0298: Enoyl-CoA hydratase (EC 4.2.1.17)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_1012: Enoyl-CoA hydratase (EC 4.2.1.17)	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase (EC 4.2.1.17)

CRON 17.
paaG	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	* Novosphingobium aromaticivorans DSM 12444 Site: position = -315 score = 5.05768 sequence = CTTTACGTAAAGGTCATG Gene: Saro_3457: Enoyl-CoA hydratase/carnithine racemase	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S Gene: SJA_C1-24270: Enoyl-CoA hydratase/carnithine racemase	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Enoyl-CoA hydratase/carnithine racemase

CRON 18.
acdH	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	* Sphingopyxis alaskensis RB2256 Site: position = -64 score = 5.88846 sequence = CTTGACGTTTACGTCAAC Site: position = -58 score = 5.06717 sequence = GTTTACGTCAACGTCGGG Gene: Sala_1247: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
acdL	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1246: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdA	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_1245: 3-hydroxyacyl-CoA dehydrogenase	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	3-hydroxyacyl-CoA dehydrogenase
acdB	* Erythrobacter litoralis HTCC2594 Site: position = -60 score = 5.48757 sequence = CTTTACGAAAACGTCAAC Gene: ELI_00045: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	* Erythrobacter sp. NAP1 Site: position = -52 score = 5.49251 sequence = CTTTACGGATACGTCAAC Gene: NAP1_15383: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2349: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sphingopyxis alaskensis RB2256 Gene: Sala_1244: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1 Gene: Swit_1771: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Zymomonas mobilis subsp. mobilis ZM4	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
NAP1_15388	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1 Gene: NAP1_15388: Acetyl-CoA acetyltransferase	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2502: Acetyl-CoA acetyltransferase	Sphingopyxis alaskensis RB2256	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acetyl-CoA acetyltransferase

CRON 19.
SJA_C1-17900	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_2125: Acyl dehydratase	Sphingopyxis alaskensis RB2256	* Sphingobium japonicum UT26S Site: position = -50 score = 5.3221 sequence = GTTTTCGTAAACGGAAAC Site: position = -56 score = 5.77274 sequence = GTTGACGTTTTCGTAAAC Gene: SJA_C1-17900: Acyl dehydratase	Sphingomonas wittichii RW1 Gene: Swit_1390: Acyl dehydratase	Zymomonas mobilis subsp. mobilis ZM4	Acyl dehydratase

CRON 20.
acdQ	* Erythrobacter litoralis HTCC2594 Site: position = -44 score = 5.06568 sequence = CCTAACGTTAGCGTCAAG Gene: ELI_09605: Acyl-CoA dehydrogenases	* Erythrobacter sp. NAP1 Site: position = -55 score = 5.0393 sequence = GATAACGTAAGCGTCAAC Site: position = -61 score = 4.4757 sequence = AATGACGATAACGTAAGC Gene: NAP1_10032: Acyl-CoA dehydrogenases	* Novosphingobium aromaticivorans DSM 12444 Site: position = -168 score = 5.29234 sequence = TTTTACGTTTACGTCAGC Site: position = -162 score = 4.274 sequence = GTTTACGTCAGCTTAGGG Gene: Saro_0999: Acyl-CoA dehydrogenases	* Sphingopyxis alaskensis RB2256 Site: position = -63 score = 5.48544 sequence = GTTGACGCTTGCGTAAAG Gene: Sala_3077: Acyl-CoA dehydrogenases	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenases
NAP1_10027	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1 Gene: NAP1_10027: GTPases - Sulfate adenylate transferase subunit 1	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_0972: GTPases - Sulfate adenylate transferase subunit 1	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	GTPases - Sulfate adenylate transferase subunit 1
acdP	Erythrobacter litoralis HTCC2594 Gene: ELI_09600: Acyl-CoA dehydrogenase family protein	Erythrobacter sp. NAP1 Gene: NAP1_10022: Acyl-CoA dehydrogenase family protein	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1000: Acyl-CoA dehydrogenase family protein	Sphingopyxis alaskensis RB2256 Gene: Sala_3078: Acyl-CoA dehydrogenase family protein	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Acyl-CoA dehydrogenase family protein
Saro_1001	Erythrobacter litoralis HTCC2594 Gene: ELI_09595: short-chain dehydrogenase/reductase SDR	Erythrobacter sp. NAP1 Gene: NAP1_10017: short-chain dehydrogenase/reductase SDR	Novosphingobium aromaticivorans DSM 12444 Gene: Saro_1001: short-chain dehydrogenase/reductase SDR	Sphingopyxis alaskensis RB2256 Gene: Sala_3079: short-chain dehydrogenase/reductase SDR	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	short-chain dehydrogenase/reductase SDR

CRON 21.
etfB	* Erythrobacter litoralis HTCC2594 Site: position = -72 score = 5.66746 sequence = GTTTACGTAAACGCAAGC Site: position = -78 score = 5.99504 sequence = CTTGACGTTTACGTAAAC Gene: ELI_13505: Electron transfer flavoprotein, beta subunit	* Erythrobacter sp. NAP1 Site: position = -104 score = 5.99504 sequence = CTTGACGTTTACGTAAAC Site: position = -98 score = 5.66746 sequence = GTTTACGTAAACGCAAGC Gene: NAP1_12578: Electron transfer flavoprotein, beta subunit	2 Novosphingobium aromaticivorans DSM 12444* Site: position = -57 score = 5.41011 sequence = GTTTACGTAAGCGCAAAT Site: position = -63 score = 5.90709 sequence = GTTGACGTTTACGTAAGC Gene: Saro_3169: Electron transfer flavoprotein, beta subunit Gene: Saro_0456: Electron transfer flavoprotein, beta subunit	* Sphingopyxis alaskensis RB2256 Site: position = -60 score = 5.41011 sequence = GTTTACGTAAGCGCAAAT Site: position = -66 score = 5.90709 sequence = GTTGACGTTTACGTAAGC Gene: Sala_0178: Electron transfer flavoprotein, beta subunit	Sphingobium japonicum UT26S Gene: SJA_C1-11600: Electron transfer flavoprotein, beta subunit	Sphingomonas wittichii RW1 Gene: Swit_3196: Electron transfer flavoprotein, beta subunit	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1480: Electron transfer flavoprotein, beta subunit	Electron transfer flavoprotein, beta subunit
etfA	Erythrobacter litoralis HTCC2594 Gene: ELI_13500: Electron transfer flavoprotein, alpha subunit	Erythrobacter sp. NAP1 Gene: NAP1_12583: Electron transfer flavoprotein, alpha subunit	2 Novosphingobium aromaticivorans DSM 12444 Gene: Saro_3168: Electron transfer flavoprotein, alpha subunit Gene: Saro_0457: Electron transfer flavoprotein, alpha subunit	Sphingopyxis alaskensis RB2256 Gene: Sala_0179: Electron transfer flavoprotein, alpha subunit	Sphingobium japonicum UT26S Gene: SJA_C1-11610: Electron transfer flavoprotein, alpha subunit	Sphingomonas wittichii RW1 Gene: Swit_3195: Electron transfer flavoprotein, alpha subunit	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1479: Electron transfer flavoprotein, alpha subunit	Electron transfer flavoprotein, alpha subunit

CRON 22.
fadD	Erythrobacter litoralis HTCC2594 Gene: ELI_13210: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Erythrobacter sp. NAP1 Gene: NAP1_12813: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Novosphingobium aromaticivorans DSM 12444	Sphingopyxis alaskensis RB2256 Gene: Sala_0169: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Sphingobium japonicum UT26S Site: position = -44 score = 5.34443 sequence = CTTTACGCTTGCGTAAAG Site: position = -38 score = 4.48393 sequence = GCTTGCGTAAAGGGAAAG Gene: SJA_C1-12520: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Sphingomonas wittichii RW1	Zymomonas mobilis subsp. mobilis ZM4	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Sphingomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --