Regulog LiuR - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Sphingomonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 15 | 7 |
| Erythrobacter sp. NAP1 | 19 | 9 |
| Novosphingobium aromaticivorans DSM 12444 | 9 | 5 |
| Sphingopyxis alaskensis RB2256 | 34 | 18 |
| Sphingobium japonicum UT26S | 6 | 4 |
| Sphingomonas wittichii RW1 | 1 | 1 |
| Zymomonas mobilis subsp. mobilis ZM4 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| liuR |
*
Erythrobacter litoralis HTCC2594 Site: position = -37 score = 5.27086 sequence = CTTGACCTTTACGTAAAG Site: position = -31 score = 4.68921 sequence = CTTTACGTAAAGGGCATG Gene: ELI_05890: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Erythrobacter sp. NAP1 Site: position = -30 score = 5.37222 sequence = GTTCACGTAAAGGTAAAG Site: position = -36 score = 5.75913 sequence = CTTGACGTTCACGTAAAG Gene: NAP1_05180: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -37 score = 5.01269 sequence = ATTGACGCTTACGTAAGG Site: position = -31 score = 4.50571 sequence = GCTTACGTAAGGGGCAGG Gene: Saro_2106: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Sphingopyxis alaskensis RB2256 Site: position = -1 score = 5.32683 sequence = ATTGACGTTCACGTCAAC Site: position = 5 score = 5.26614 sequence = GTTCACGTCAACGGAAAC Gene: Sala_1538: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Sphingobium japonicum UT26S Site: position = -37 score = 6.10613 sequence = CTTGACGTAAACGTAAAG Gene: SJA_C1-09700: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: Swit_0576: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
|
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| acdH |
Gene: ELI_05895: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: NAP1_05185: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Saro_2105: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Sala_1537: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: SJA_C1-09690: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
|
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 2. | ||||||||
| Sala_0379 |
Gene: ELI_14570: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
Gene: NAP1_11598: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
|
*
Sphingopyxis alaskensis RB2256 Site: position = -41 score = 6.0054 sequence = CTTGACGTTAACGTCAAC Gene: Sala_0379: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
Gene: SJA_C1-02010: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
|
|
Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
| CRON 3. | ||||||||
| etfD |
Gene: ELI_06930: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: NAP1_06170: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: Saro_1781: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Sphingopyxis alaskensis RB2256 Site: position = -99 score = 4.74627 sequence = GTTGACGGGCGCGTCAAT Gene: Sala_1185: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: SJA_C1-17330: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Sphingomonas wittichii RW1 Site: position = -90 score = 4.69331 sequence = GTTGACGAAGGCGTCAAT Gene: Swit_4100: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: ZMO1184: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
| CRON 4. | ||||||||
| acdH4 |
Gene: ELI_09620: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: NAP1_10047: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Saro_0996: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
*
Sphingopyxis alaskensis RB2256 Site: position = -34 score = 5.96959 sequence = GTTTACGTGAACGTAAAG Site: position = -28 score = 4.44539 sequence = GTGAACGTAAAGGGAAAG Gene: Sala_3074: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: SJA_C2-02830: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
|
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| Sala_3073 |
Gene: ELI_09625: Alcohol dehydrogenase (EC 1.1.1.1) |
Gene: NAP1_10052: Alcohol dehydrogenase (EC 1.1.1.1) |
Gene: Saro_0995: Alcohol dehydrogenase (EC 1.1.1.1) |
Gene: Sala_3073: Alcohol dehydrogenase (EC 1.1.1.1) |
|
|
|
Alcohol dehydrogenase (EC 1.1.1.1) |
| Sala_3072 |
Gene: ELI_09630: Predicted aminoglycoside phosphotransferase |
Gene: NAP1_10057: Predicted aminoglycoside phosphotransferase |
Gene: Saro_0994: Predicted aminoglycoside phosphotransferase |
Gene: Sala_3072: Predicted aminoglycoside phosphotransferase |
Gene: SJA_C2-02820: Predicted aminoglycoside phosphotransferase |
|
|
Predicted aminoglycoside phosphotransferase |
| Sala_0761 |
Gene: ELI_11495: Bll4978 protein |
Gene: NAP1_14648: Bll4978 protein |
Gene: Saro_0147: Bll4978 protein |
*
Sphingopyxis alaskensis RB2256 Site: position = -23 score = 4.78959 sequence = GTTTACGTAAAGGGAGAG Site: position = -29 score = 5.9536 sequence = CTTGACGTTTACGTAAAG Gene: Sala_0761: Bll4978 protein |
|
|
|
Bll4978 protein |
| Saro_0871 |
Gene: ELI_10140: TesB-like acyl-CoA thioesterase 1 |
2
Erythrobacter sp. NAP1 Gene: NAP1_10643: TesB-like acyl-CoA thioesterase 1 Gene: NAP1_08055: TesB-like acyl-CoA thioesterase 1 |
|
Gene: Sala_0760: TesB-like acyl-CoA thioesterase 1 |
|
|
|
TesB-like acyl-CoA thioesterase 1 |
| CRON 5. | ||||||||
| acdH3 |
Gene: ELI_00060: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: NAP1_09237: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Saro_0132: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Sphingopyxis alaskensis RB2256 Site: position = -87 score = 5.45983 sequence = GTGGACGTAAACGTAAGG Site: position = -93 score = 5.44474 sequence = CTTGACGTGGACGTAAAC Gene: Sala_3159: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
Gene: Swit_1764: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| acdA3 |
*
Erythrobacter litoralis HTCC2594 Site: position = -58 score = 5.64971 sequence = GTTGACGCAAACGTAAGG Gene: ELI_01475: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Erythrobacter sp. NAP1 Site: position = -32 score = 5.3468 sequence = GTTTACGTAAACGGGAAG Gene: NAP1_00605: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Saro_1069: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Sala_3158: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: SJA_C2-03860: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Swit_1006: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| Sala_3157 |
Gene: ELI_01480: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: NAP1_00610: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Saro_1070: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sala_3157: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
|
3
Sphingomonas wittichii RW1 Gene: Swit_1009: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Gene: Swit_1602: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Gene: Swit_1772: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
|
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
| Sala_3156 |
|
|
|
Gene: Sala_3156: putative 4-hydroxybenzoyl-CoA thioesterase |
Gene: SJA_C1-08110: putative 4-hydroxybenzoyl-CoA thioesterase |
|
|
putative 4-hydroxybenzoyl-CoA thioesterase |
| fpr |
|
*
Erythrobacter sp. NAP1 Site: position = -60 score = 4.93303 sequence = GTTGACGGACACGTCACC Gene: NAP1_09247: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|
Gene: Sala_1032: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: SJA_C1-10850: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: Swit_0104: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: ZMO1753: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| NAP1_09242 |
|
Gene: NAP1_09242: hypothetical protein |
|
|
|
|
|
hypothetical protein |
| acdB4 |
Gene: ELI_01485: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
Gene: NAP1_00635: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
Gene: Saro_1071: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
*
Sphingopyxis alaskensis RB2256 Site: position = -75 score = 5.61654 sequence = CCTTACGTTTACGTAAAG Gene: Sala_0583: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
|
2
Sphingomonas wittichii RW1 Gene: Swit_1011: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) Gene: Swit_2021: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
|
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
| acdA |
*
Erythrobacter litoralis HTCC2594 Site: position = -73 score = 5.7313 sequence = GTTGACGTTTTCGTAAAG Gene: ELI_00050: Enoyl-CoA hydratase (EC 4.2.1.17) |
*
Erythrobacter sp. NAP1 Site: position = -90 score = 5.60564 sequence = GTTGACGTATCCGTAAAG Gene: NAP1_15378: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Saro_1283: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
|
|
|
Enoyl-CoA hydratase (EC 4.2.1.17) |
| ELI_00055 |
Gene: ELI_00055: Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
|
Gene: Saro_2045: Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
Gene: Sala_1242: Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
Gene: SJA_C2-03980: Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
Gene: Swit_1734: Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
|
Alpha-methylacyl-CoA racemase (EC 5.1.99.4) |
| NAP1_15373 |
Gene: ELI_11075: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: NAP1_15373: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|
|
|
Gene: Swit_1998: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| CRON 6. | ||||||||
| acdB3 |
Gene: ELI_04900: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: NAP1_04055: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Saro_1897: Enoyl-CoA hydratase (EC 4.2.1.17) |
*
Sphingopyxis alaskensis RB2256 Site: position = -41 score = 4.81386 sequence = GTGAACGTAAAGGTAAAG Site: position = -47 score = 5.85227 sequence = CTTTACGTGAACGTAAAG Gene: Sala_1487: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: SJA_C2-03900: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Swit_1999: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
Enoyl-CoA hydratase (EC 4.2.1.17) |
| CRON 7. | ||||||||
| Sala_0922 |
Gene: ELI_05445: 2-nitropropane dioxygenase family protein |
Gene: NAP1_04665: 2-nitropropane dioxygenase family protein |
Gene: Saro_2269: 2-nitropropane dioxygenase family protein |
*
Sphingopyxis alaskensis RB2256 Site: position = -44 score = 5.05671 sequence = GCTTACGTTAAGGTCAAT Site: position = -50 score = 4.40566 sequence = CTTTCCGCTTACGTTAAG Gene: Sala_0922: 2-nitropropane dioxygenase family protein |
2
Sphingobium japonicum UT26S Gene: SJA_C1-21850: 2-nitropropane dioxygenase family protein Gene: SJA_C1-32700: 2-nitropropane dioxygenase family protein |
|
|
2-nitropropane dioxygenase family protein |
| CRON 8. | ||||||||
| Sala_1639 |
Gene: ELI_05950: MoxR-like ATPases |
Gene: NAP1_05250: MoxR-like ATPases |
Gene: Saro_2090: MoxR-like ATPases |
*
Sphingopyxis alaskensis RB2256 Site: position = -35 score = 5.15399 sequence = CTTGACGTTCACGTTAAG Site: position = -29 score = 4.96815 sequence = GTTCACGTTAAGGGAAAG Gene: Sala_1639: MoxR-like ATPases |
Gene: SJA_C1-14310: MoxR-like ATPases |
Gene: Swit_2638: MoxR-like ATPases |
|
MoxR-like ATPases |
| CRON 9. | ||||||||
| acdB2 |
|
|
|
*
Sphingopyxis alaskensis RB2256 Site: position = -54 score = 6.15832 sequence = GTTGACGTAAACGTCAAC Gene: Sala_1808: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
|
|
Enoyl-CoA hydratase (EC 4.2.1.17) |
| acdA2 |
Gene: ELI_00285: Acetyl-CoA acetyltransferase |
|
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Gene: Sala_1809: Acetyl-CoA acetyltransferase |
|
|
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Acetyl-CoA acetyltransferase |
| CRON 10. | ||||||||
| Sala_1854 |
Gene: ELI_09905: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
Gene: NAP1_10308: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
Gene: Saro_2593: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
*
Sphingopyxis alaskensis RB2256 Site: position = -36 score = 4.85347 sequence = CATGACGTTTCCGTCAAC Site: position = -30 score = 5.22291 sequence = GTTTCCGTCAACGTAAGC Gene: Sala_1854: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
|
|
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Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
| CRON 11. | ||||||||
| acdL2 |
|
Gene: NAP1_09632: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
|
*
Sphingopyxis alaskensis RB2256 Site: position = -64 score = 5.40297 sequence = CTTGCCGTTTACGTAAAG Site: position = -58 score = 5.06809 sequence = GTTTACGTAAAGGTGAGC Gene: Sala_1104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
|
|
|
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| acdH2 |
Gene: ELI_09235: Acyl-CoA dehydrogenase family protein |
2
Erythrobacter sp. NAP1 Gene: NAP1_00170: Acyl-CoA dehydrogenase family protein Gene: NAP1_09627: Acyl-CoA dehydrogenase family protein |
|
Gene: Sala_1105: Acyl-CoA dehydrogenase family protein |
|
|
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Acyl-CoA dehydrogenase family protein |
| CRON 12. | ||||||||
| acdH5 |
Gene: ELI_11490: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
|
*
Sphingopyxis alaskensis RB2256 Site: position = -36 score = 5.88846 sequence = CTTGACGTTTACGTCAAC Gene: Sala_2313: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
|
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 13. | ||||||||
| ELI_08825 |
*
Erythrobacter litoralis HTCC2594 Site: position = -71 score = 5.05701 sequence = GTTGACGGGCGCGTAAAG Gene: ELI_08825: Possible 3-oxo-(Acyl) acyl carrier protein reductase |
*
Erythrobacter sp. NAP1 Site: position = -70 score = 5.38411 sequence = GTTTACGCGAGCGTAAAG Gene: NAP1_08185: Possible 3-oxo-(Acyl) acyl carrier protein reductase |
Gene: Saro_2673: Possible 3-oxo-(Acyl) acyl carrier protein reductase |
Gene: Sala_0531: Possible 3-oxo-(Acyl) acyl carrier protein reductase |
|
|
|
Possible 3-oxo-(Acyl) acyl carrier protein reductase |
| CRON 14. | ||||||||
| Saro_1064 |
Gene: ELI_02555: Acyl-CoA thioesterase II (EC 3.1.2.-) |
*
Erythrobacter sp. NAP1 Site: position = -37 score = 5.57275 sequence = CTTGACGTTTGCGTAAGC Gene: NAP1_01850: Acyl-CoA thioesterase II (EC 3.1.2.-) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -36 score = 5.20666 sequence = GTTGACGTAAACGGGAGC Gene: Saro_1064: Acyl-CoA thioesterase II (EC 3.1.2.-) |
Gene: Sala_1443: Acyl-CoA thioesterase II (EC 3.1.2.-) |
|
Gene: Swit_2248: Acyl-CoA thioesterase II (EC 3.1.2.-) |
|
Acyl-CoA thioesterase II (EC 3.1.2.-) |
| CRON 15. | ||||||||
| fadA |
|
|
|
|
*
Sphingobium japonicum UT26S Site: position = -66 score = 5.87827 sequence = CTTTACGTAAACGTAAAT Gene: SJA_C1-20790: acetyl-CoA acyltransferase |
|
|
acetyl-CoA acyltransferase |
| fadB |
|
|
|
|
Gene: SJA_C1-20800: 3-hydroxyacyl-CoA dehydrogenase |
|
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3-hydroxyacyl-CoA dehydrogenase |
| CRON 16. | ||||||||
| Sala_0297 |
Gene: ELI_14560: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
|
Gene: Saro_2792: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
*
Sphingopyxis alaskensis RB2256 Site: position = -56 score = 5.91271 sequence = GTTGACGTAAACGTCAAT Gene: Sala_0297: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
|
Gene: Swit_0996: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
|
Gluconate 5-dehydrogenase (EC 1.1.1.69) |
| acdB5 |
Gene: ELI_07190: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
Gene: Saro_1741: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Sala_0298: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
Gene: Swit_1012: Enoyl-CoA hydratase (EC 4.2.1.17) |
|
Enoyl-CoA hydratase (EC 4.2.1.17) |
| CRON 17. | ||||||||
| paaG |
|
|
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -315 score = 5.05768 sequence = CTTTACGTAAAGGTCATG Gene: Saro_3457: Enoyl-CoA hydratase/carnithine racemase |
|
Gene: SJA_C1-24270: Enoyl-CoA hydratase/carnithine racemase |
|
|
Enoyl-CoA hydratase/carnithine racemase |
| CRON 18. | ||||||||
| acdH |
|
|
|
*
Sphingopyxis alaskensis RB2256 Site: position = -64 score = 5.88846 sequence = CTTGACGTTTACGTCAAC Site: position = -58 score = 5.06717 sequence = GTTTACGTCAACGTCGGG Gene: Sala_1247: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
|
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| acdL |
|
|
|
Gene: Sala_1246: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
|
|
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Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| acdA |
|
|
|
Gene: Sala_1245: 3-hydroxyacyl-CoA dehydrogenase |
|
|
|
3-hydroxyacyl-CoA dehydrogenase |
| acdB |
*
Erythrobacter litoralis HTCC2594 Site: position = -60 score = 5.48757 sequence = CTTTACGAAAACGTCAAC Gene: ELI_00045: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Erythrobacter sp. NAP1 Site: position = -52 score = 5.49251 sequence = CTTTACGGATACGTCAAC Gene: NAP1_15383: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Saro_2349: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Sala_1244: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
Gene: Swit_1771: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| NAP1_15388 |
|
Gene: NAP1_15388: Acetyl-CoA acetyltransferase |
Gene: Saro_2502: Acetyl-CoA acetyltransferase |
|
|
|
|
Acetyl-CoA acetyltransferase |
| CRON 19. | ||||||||
| SJA_C1-17900 |
|
|
Gene: Saro_2125: Acyl dehydratase |
|
*
Sphingobium japonicum UT26S Site: position = -50 score = 5.3221 sequence = GTTTTCGTAAACGGAAAC Site: position = -56 score = 5.77274 sequence = GTTGACGTTTTCGTAAAC Gene: SJA_C1-17900: Acyl dehydratase |
Gene: Swit_1390: Acyl dehydratase |
|
Acyl dehydratase |
| CRON 20. | ||||||||
| acdQ |
*
Erythrobacter litoralis HTCC2594 Site: position = -44 score = 5.06568 sequence = CCTAACGTTAGCGTCAAG Gene: ELI_09605: Acyl-CoA dehydrogenases |
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Erythrobacter sp. NAP1 Site: position = -55 score = 5.0393 sequence = GATAACGTAAGCGTCAAC Site: position = -61 score = 4.4757 sequence = AATGACGATAACGTAAGC Gene: NAP1_10032: Acyl-CoA dehydrogenases |
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Novosphingobium aromaticivorans DSM 12444 Site: position = -168 score = 5.29234 sequence = TTTTACGTTTACGTCAGC Site: position = -162 score = 4.274 sequence = GTTTACGTCAGCTTAGGG Gene: Saro_0999: Acyl-CoA dehydrogenases |
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Sphingopyxis alaskensis RB2256 Site: position = -63 score = 5.48544 sequence = GTTGACGCTTGCGTAAAG Gene: Sala_3077: Acyl-CoA dehydrogenases |
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Acyl-CoA dehydrogenases |
| NAP1_10027 |
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Gene: NAP1_10027: GTPases - Sulfate adenylate transferase subunit 1 |
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Gene: Sala_0972: GTPases - Sulfate adenylate transferase subunit 1 |
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GTPases - Sulfate adenylate transferase subunit 1 |
| acdP |
Gene: ELI_09600: Acyl-CoA dehydrogenase family protein |
Gene: NAP1_10022: Acyl-CoA dehydrogenase family protein |
Gene: Saro_1000: Acyl-CoA dehydrogenase family protein |
Gene: Sala_3078: Acyl-CoA dehydrogenase family protein |
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Acyl-CoA dehydrogenase family protein |
| Saro_1001 |
Gene: ELI_09595: short-chain dehydrogenase/reductase SDR |
Gene: NAP1_10017: short-chain dehydrogenase/reductase SDR |
Gene: Saro_1001: short-chain dehydrogenase/reductase SDR |
Gene: Sala_3079: short-chain dehydrogenase/reductase SDR |
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short-chain dehydrogenase/reductase SDR |
| CRON 21. | ||||||||
| etfB |
*
Erythrobacter litoralis HTCC2594 Site: position = -72 score = 5.66746 sequence = GTTTACGTAAACGCAAGC Site: position = -78 score = 5.99504 sequence = CTTGACGTTTACGTAAAC Gene: ELI_13505: Electron transfer flavoprotein, beta subunit |
*
Erythrobacter sp. NAP1 Site: position = -104 score = 5.99504 sequence = CTTGACGTTTACGTAAAC Site: position = -98 score = 5.66746 sequence = GTTTACGTAAACGCAAGC Gene: NAP1_12578: Electron transfer flavoprotein, beta subunit |
*2
Novosphingobium aromaticivorans DSM 12444 Site: position = -57 score = 5.41011 sequence = GTTTACGTAAGCGCAAAT Site: position = -63 score = 5.90709 sequence = GTTGACGTTTACGTAAGC Gene: Saro_3169: Electron transfer flavoprotein, beta subunit Gene: Saro_0456: Electron transfer flavoprotein, beta subunit |
*
Sphingopyxis alaskensis RB2256 Site: position = -60 score = 5.41011 sequence = GTTTACGTAAGCGCAAAT Site: position = -66 score = 5.90709 sequence = GTTGACGTTTACGTAAGC Gene: Sala_0178: Electron transfer flavoprotein, beta subunit |
Gene: SJA_C1-11600: Electron transfer flavoprotein, beta subunit |
Gene: Swit_3196: Electron transfer flavoprotein, beta subunit |
Gene: ZMO1480: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: ELI_13500: Electron transfer flavoprotein, alpha subunit |
Gene: NAP1_12583: Electron transfer flavoprotein, alpha subunit |
2
Novosphingobium aromaticivorans DSM 12444 Gene: Saro_3168: Electron transfer flavoprotein, alpha subunit Gene: Saro_0457: Electron transfer flavoprotein, alpha subunit |
Gene: Sala_0179: Electron transfer flavoprotein, alpha subunit |
Gene: SJA_C1-11610: Electron transfer flavoprotein, alpha subunit |
Gene: Swit_3195: Electron transfer flavoprotein, alpha subunit |
Gene: ZMO1479: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| CRON 22. | ||||||||
| fadD |
Gene: ELI_13210: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: NAP1_12813: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Gene: Sala_0169: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Sphingobium japonicum UT26S Site: position = -44 score = 5.34443 sequence = CTTTACGCTTGCGTAAAG Site: position = -38 score = 4.48393 sequence = GCTTGCGTAAAGGGAAAG Gene: SJA_C1-12520: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |