Profile of regulator LiuR in Sphingomonadales
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Sphingomonadales |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Sphingomonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Erythrobacter litoralis HTCC2594 | |||||
| ELI_08825 | null | -71 | 5.1 | GTTGACGGGCGCGTAAAG | |
| ELI_00045 | acdB | -60 | 5.5 | CTTTACGAAAACGTCAAC | |
| ELI_09605 | acdQ | -44 | 5.1 | CCTAACGTTAGCGTCAAG | |
| ELI_00050 | acdA | -73 | 5.7 | GTTGACGTTTTCGTAAAG | |
| ELI_01475 | acdA3 | -58 | 5.6 | GTTGACGCAAACGTAAGG | |
| ELI_13505 | etfB | -72 | 5.7 | GTTTACGTAAACGCAAGC | |
| ELI_13505 | etfB | -78 | 6 | CTTGACGTTTACGTAAAC | |
| ELI_05890 | liuR | -37 | 5.3 | CTTGACCTTTACGTAAAG | |
| ELI_05890 | liuR | -31 | 4.7 | CTTTACGTAAAGGGCATG | |
| Erythrobacter sp. NAP1 | |||||
| NAP1_08185 | null | -70 | 5.4 | GTTTACGCGAGCGTAAAG | |
| NAP1_10032 | acdQ | -55 | 5 | GATAACGTAAGCGTCAAC | |
| NAP1_01850 | null | -37 | 5.6 | CTTGACGTTTGCGTAAGC | |
| NAP1_15383 | acdB | -52 | 5.5 | CTTTACGGATACGTCAAC | |
| NAP1_15378 | acdA | -90 | 5.6 | GTTGACGTATCCGTAAAG | |
| NAP1_09247 | fpr | -60 | 4.9 | GTTGACGGACACGTCACC | |
| NAP1_00605 | acdA3 | -32 | 5.3 | GTTTACGTAAACGGGAAG | |
| NAP1_12578 | etfB | -104 | 6 | CTTGACGTTTACGTAAAC | |
| NAP1_12578 | etfB | -98 | 5.7 | GTTTACGTAAACGCAAGC | |
| NAP1_05180 | liuR | -30 | 5.4 | GTTCACGTAAAGGTAAAG | |
| NAP1_05180 | liuR | -36 | 5.8 | CTTGACGTTCACGTAAAG | |
| NAP1_10032 | acdQ | -61 | 4.5 | AATGACGATAACGTAAGC | |
| Novosphingobium aromaticivorans DSM 12444 | |||||
| Saro_3457 | paaG | -315 | 5.1 | CTTTACGTAAAGGTCATG | |
| Saro_1064 | null | -36 | 5.2 | GTTGACGTAAACGGGAGC | |
| Saro_0999 | acdQ | -168 | 5.3 | TTTTACGTTTACGTCAGC | |
| Saro_0999 | acdQ | -162 | 4.3 | GTTTACGTCAGCTTAGGG | |
| Saro_3169 | etfB | -57 | 5.4 | GTTTACGTAAGCGCAAAT | |
| Saro_3169 | etfB | -63 | 5.9 | GTTGACGTTTACGTAAGC | |
| Saro_2106 | liuR | -37 | 5 | ATTGACGCTTACGTAAGG | |
| Saro_2106 | liuR | -31 | 4.5 | GCTTACGTAAGGGGCAGG | |
| Sphingopyxis alaskensis RB2256 | |||||
| Sala_1854 | null | -36 | 4.9 | CATGACGTTTCCGTCAAC | |
| Sala_0922 | null | -44 | 5.1 | GCTTACGTTAAGGTCAAT | |
| Sala_1185 | etfD | -99 | 4.7 | GTTGACGGGCGCGTCAAT | |
| Sala_1487 | acdB3 | -41 | 4.8 | GTGAACGTAAAGGTAAAG | |
| Sala_0922 | null | -50 | 4.4 | CTTTCCGCTTACGTTAAG | |
| Sala_1487 | acdB3 | -47 | 5.9 | CTTTACGTGAACGTAAAG | |
| Sala_1639 | null | -35 | 5.2 | CTTGACGTTCACGTTAAG | |
| Sala_1639 | null | -29 | 5 | GTTCACGTTAAGGGAAAG | |
| Sala_2313 | acdH5 | -36 | 5.9 | CTTGACGTTTACGTCAAC | |
| Sala_0761 | null | -23 | 4.8 | GTTTACGTAAAGGGAGAG | |
| Sala_0761 | null | -29 | 6 | CTTGACGTTTACGTAAAG | |
| Sala_1247 | acdH | -64 | 5.9 | CTTGACGTTTACGTCAAC | |
| Sala_1247 | acdH | -58 | 5.1 | GTTTACGTCAACGTCGGG | |
| Sala_1104 | acdL2 | -64 | 5.4 | CTTGCCGTTTACGTAAAG | |
| Sala_1104 | acdL2 | -58 | 5.1 | GTTTACGTAAAGGTGAGC | |
| Sala_3077 | acdQ | -63 | 5.5 | GTTGACGCTTGCGTAAAG | |
| Sala_0583 | acdB4 | -75 | 5.6 | CCTTACGTTTACGTAAAG | |
| Sala_3159 | acdH3 | -87 | 5.5 | GTGGACGTAAACGTAAGG | |
| Sala_3159 | acdH3 | -93 | 5.4 | CTTGACGTGGACGTAAAC | |
| Sala_0178 | etfB | -60 | 5.4 | GTTTACGTAAGCGCAAAT | |
| Sala_0178 | etfB | -66 | 5.9 | GTTGACGTTTACGTAAGC | |
| Sala_3074 | acdH4 | -34 | 6 | GTTTACGTGAACGTAAAG | |
| Sala_3074 | acdH4 | -28 | 4.4 | GTGAACGTAAAGGGAAAG | |
| Sala_1538 | liuR | -1 | 5.3 | ATTGACGTTCACGTCAAC | |
| Sala_1538 | liuR | 5 | 5.3 | GTTCACGTCAACGGAAAC | |
| Sala_0297 | null | -56 | 5.9 | GTTGACGTAAACGTCAAT | |
| Sala_1808 | acdB2 | -54 | 6.2 | GTTGACGTAAACGTCAAC | |
| Sala_0379 | null | -41 | 6 | CTTGACGTTAACGTCAAC | |
| Sala_1854 | null | -30 | 5.2 | GTTTCCGTCAACGTAAGC | |
| Sphingobium japonicum UT26S | |||||
| SJA_C1-12520 | fadD | -44 | 5.3 | CTTTACGCTTGCGTAAAG | |
| SJA_C1-12520 | fadD | -38 | 4.5 | GCTTGCGTAAAGGGAAAG | |
| SJA_C1-17900 | null | -50 | 5.3 | GTTTTCGTAAACGGAAAC | |
| SJA_C1-20790 | fadA | -66 | 5.9 | CTTTACGTAAACGTAAAT | |
| SJA_C1-09700 | liuR | -37 | 6.1 | CTTGACGTAAACGTAAAG | |
| SJA_C1-17900 | null | -56 | 5.8 | GTTGACGTTTTCGTAAAC | |
| Sphingomonas wittichii RW1 | |||||
| Swit_4100 | etfD | -90 | 4.7 | GTTGACGAAGGCGTCAAT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |