Regulon of LiuR in Sphingopyxis alaskensis RB2256
| Regulator type: | Transcription factor |
| TF locus tag: | Sala_1538 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 34 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Sphingomonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -64
Score: 5.4 Sequence: CTTGCCGTTTACGTAAAG
Position: -58
Score: 5.1 Sequence: GTTTACGTAAAGGTGAGC
Locus tag: Sala_1104
Name: acdL2 Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: Sala_1105
Name: acdH2 Funciton: Acyl-CoA dehydrogenase family protein |
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acdL2
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Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
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acdH2
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Acyl-CoA dehydrogenase family protein
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Position: -29
Score: 6 Sequence: CTTGACGTTTACGTAAAG
Position: -23
Score: 4.8 Sequence: GTTTACGTAAAGGGAGAG
Locus tag: Sala_0761
Name: null Funciton: Bll4978 protein
Locus tag: Sala_0760
Name: null Funciton: TesB-like acyl-CoA thioesterase 1 |
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Bll4978 protein
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TesB-like acyl-CoA thioesterase 1
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Position: -36
Score: 5.9 Sequence: CTTGACGTTTACGTCAAC
Locus tag: Sala_2313
Name: acdH5 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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acdH5
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -56
Score: 5.9 Sequence: GTTGACGTAAACGTCAAT
Locus tag: Sala_0297
Name: null Funciton: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Locus tag: Sala_0298
Name: acdB5 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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Gluconate 5-dehydrogenase (EC 1.1.1.69)
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acdB5
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -41
Score: 6 Sequence: CTTGACGTTAACGTCAAC
Locus tag: Sala_0379
Name: null Funciton: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) |
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Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
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Position: -54
Score: 6.2 Sequence: GTTGACGTAAACGTCAAC
Locus tag: Sala_1808
Name: acdB2 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Sala_1809
Name: acdA2 Funciton: Acetyl-CoA acetyltransferase |
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acdB2
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Enoyl-CoA hydratase (EC 4.2.1.17)
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acdA2
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Acetyl-CoA acetyltransferase
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Position: -63
Score: 5.5 Sequence: GTTGACGCTTGCGTAAAG
Locus tag: Sala_3077
Name: acdQ Funciton: Acyl-CoA dehydrogenases
Locus tag: Sala_3078
Name: acdP Funciton: Acyl-CoA dehydrogenase family protein
Locus tag: Sala_3079
Name: null Funciton: short-chain dehydrogenase/reductase SDR |
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acdQ
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Acyl-CoA dehydrogenases
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acdP
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Acyl-CoA dehydrogenase family protein
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short-chain dehydrogenase/reductase SDR
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Position: -1
Score: 5.3 Sequence: ATTGACGTTCACGTCAAC
Position: 5
Score: 5.3 Sequence: GTTCACGTCAACGGAAAC
Locus tag: Sala_1538
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sala_1537
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -99
Score: 4.7 Sequence: GTTGACGGGCGCGTCAAT
Locus tag: Sala_1185
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -50
Score: 4.4 Sequence: CTTTCCGCTTACGTTAAG
Position: -44
Score: 5.1 Sequence: GCTTACGTTAAGGTCAAT
Locus tag: Sala_0922
Name: null Funciton: 2-nitropropane dioxygenase family protein |
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2-nitropropane dioxygenase family protein
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Position: -36
Score: 4.9 Sequence: CATGACGTTTCCGTCAAC
Position: -30
Score: 5.2 Sequence: GTTTCCGTCAACGTAAGC
Locus tag: Sala_1854
Name: null Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
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Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
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Position: -64
Score: 5.9 Sequence: CTTGACGTTTACGTCAAC
Position: -58
Score: 5.1 Sequence: GTTTACGTCAACGTCGGG
Locus tag: Sala_1247
Name: acdH Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Sala_1246
Name: acdL Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: Sala_1245
Name: acdA Funciton: 3-hydroxyacyl-CoA dehydrogenase
Locus tag: Sala_1244
Name: acdB Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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acdH
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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acdL
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Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
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acdA
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3-hydroxyacyl-CoA dehydrogenase
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acdB
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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Position: -47
Score: 5.9 Sequence: CTTTACGTGAACGTAAAG
Position: -41
Score: 4.8 Sequence: GTGAACGTAAAGGTAAAG
Locus tag: Sala_1487
Name: acdB3 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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acdB3
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -35
Score: 5.2 Sequence: CTTGACGTTCACGTTAAG
Position: -29
Score: 5 Sequence: GTTCACGTTAAGGGAAAG
Locus tag: Sala_1639
Name: null Funciton: MoxR-like ATPases |
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MoxR-like ATPases
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Position: -93
Score: 5.4 Sequence: CTTGACGTGGACGTAAAC
Position: -87
Score: 5.5 Sequence: GTGGACGTAAACGTAAGG
Locus tag: Sala_3159
Name: acdH3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Sala_3158
Name: acdA3 Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Sala_3157
Name: null Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Locus tag: Sala_3156
Name: null Funciton: putative 4-hydroxybenzoyl-CoA thioesterase |
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acdH3
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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acdA3
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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putative 4-hydroxybenzoyl-CoA thioesterase
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Position: -75
Score: 5.6 Sequence: CCTTACGTTTACGTAAAG
Locus tag: Sala_0583
Name: acdB4 Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) |
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acdB4
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
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Position: -34
Score: 6 Sequence: GTTTACGTGAACGTAAAG
Position: -28
Score: 4.4 Sequence: GTGAACGTAAAGGGAAAG
Locus tag: Sala_3074
Name: acdH4 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Sala_3073
Name: null Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
Locus tag: Sala_3072
Name: null Funciton: Predicted aminoglycoside phosphotransferase |
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acdH4
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Alcohol dehydrogenase (EC 1.1.1.1)
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Predicted aminoglycoside phosphotransferase
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Position: -66
Score: 5.9 Sequence: GTTGACGTTTACGTAAGC
Position: -60
Score: 5.4 Sequence: GTTTACGTAAGCGCAAAT
Locus tag: Sala_0178
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Sala_0179
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |