Regulon of LiuR in Sphingopyxis alaskensis RB2256

Properties
Regulator type:	Transcription factor
TF locus tag:	Sala_1538
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Sphingomonadales
Statistics of regulated genes:
- Genes	34
- Operons	18
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Sphingomonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -64 Score: 5.4 Sequence: CTTGCCGTTTACGTAAAG Position: -58 Score: 5.1 Sequence: GTTTACGTAAAGGTGAGC Locus tag: Sala_1104 Name: acdL2 Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) Locus tag: Sala_1105 Name: acdH2 Funciton: Acyl-CoA dehydrogenase family protein
	Sala_1104	acdL2	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
	Sala_1105	acdH2	Acyl-CoA dehydrogenase family protein
Position: -29 Score: 6 Sequence: CTTGACGTTTACGTAAAG Position: -23 Score: 4.8 Sequence: GTTTACGTAAAGGGAGAG Locus tag: Sala_0761 Name: null Funciton: Bll4978 protein Locus tag: Sala_0760 Name: null Funciton: TesB-like acyl-CoA thioesterase 1
	Sala_0761		Bll4978 protein
	Sala_0760		TesB-like acyl-CoA thioesterase 1
Position: -36 Score: 5.9 Sequence: CTTGACGTTTACGTCAAC Locus tag: Sala_2313 Name: acdH5 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Sala_2313	acdH5	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -56 Score: 5.9 Sequence: GTTGACGTAAACGTCAAT Locus tag: Sala_0297 Name: null Funciton: Gluconate 5-dehydrogenase (EC 1.1.1.69) Locus tag: Sala_0298 Name: acdB5 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Sala_0297		Gluconate 5-dehydrogenase (EC 1.1.1.69)
	Sala_0298	acdB5	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -41 Score: 6 Sequence: CTTGACGTTAACGTCAAC Locus tag: Sala_0379 Name: null Funciton: Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
	Sala_0379		Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8)
Position: -54 Score: 6.2 Sequence: GTTGACGTAAACGTCAAC Locus tag: Sala_1808 Name: acdB2 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: Sala_1809 Name: acdA2 Funciton: Acetyl-CoA acetyltransferase
	Sala_1808	acdB2	Enoyl-CoA hydratase (EC 4.2.1.17)
	Sala_1809	acdA2	Acetyl-CoA acetyltransferase
Position: -63 Score: 5.5 Sequence: GTTGACGCTTGCGTAAAG Locus tag: Sala_3077 Name: acdQ Funciton: Acyl-CoA dehydrogenases Locus tag: Sala_3078 Name: acdP Funciton: Acyl-CoA dehydrogenase family protein Locus tag: Sala_3079 Name: null Funciton: short-chain dehydrogenase/reductase SDR
	Sala_3077	acdQ	Acyl-CoA dehydrogenases
	Sala_3078	acdP	Acyl-CoA dehydrogenase family protein
	Sala_3079		short-chain dehydrogenase/reductase SDR
Position: -1 Score: 5.3 Sequence: ATTGACGTTCACGTCAAC Position: 5 Score: 5.3 Sequence: GTTCACGTCAACGGAAAC Locus tag: Sala_1538 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: Sala_1537 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Sala_1538	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Sala_1537	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -99 Score: 4.7 Sequence: GTTGACGGGCGCGTCAAT Locus tag: Sala_1185 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	Sala_1185	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -50 Score: 4.4 Sequence: CTTTCCGCTTACGTTAAG Position: -44 Score: 5.1 Sequence: GCTTACGTTAAGGTCAAT Locus tag: Sala_0922 Name: null Funciton: 2-nitropropane dioxygenase family protein
	Sala_0922		2-nitropropane dioxygenase family protein
Position: -36 Score: 4.9 Sequence: CATGACGTTTCCGTCAAC Position: -30 Score: 5.2 Sequence: GTTTCCGTCAACGTAAGC Locus tag: Sala_1854 Name: null Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
	Sala_1854		Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
Position: -64 Score: 5.9 Sequence: CTTGACGTTTACGTCAAC Position: -58 Score: 5.1 Sequence: GTTTACGTCAACGTCGGG Locus tag: Sala_1247 Name: acdH Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Sala_1246 Name: acdL Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) Locus tag: Sala_1245 Name: acdA Funciton: 3-hydroxyacyl-CoA dehydrogenase Locus tag: Sala_1244 Name: acdB Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	Sala_1247	acdH	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Sala_1246	acdL	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
	Sala_1245	acdA	3-hydroxyacyl-CoA dehydrogenase
	Sala_1244	acdB	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -47 Score: 5.9 Sequence: CTTTACGTGAACGTAAAG Position: -41 Score: 4.8 Sequence: GTGAACGTAAAGGTAAAG Locus tag: Sala_1487 Name: acdB3 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Sala_1487	acdB3	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -35 Score: 5.2 Sequence: CTTGACGTTCACGTTAAG Position: -29 Score: 5 Sequence: GTTCACGTTAAGGGAAAG Locus tag: Sala_1639 Name: null Funciton: MoxR-like ATPases
	Sala_1639		MoxR-like ATPases
Position: -93 Score: 5.4 Sequence: CTTGACGTGGACGTAAAC Position: -87 Score: 5.5 Sequence: GTGGACGTAAACGTAAGG Locus tag: Sala_3159 Name: acdH3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Sala_3158 Name: acdA3 Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: Sala_3157 Name: null Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Locus tag: Sala_3156 Name: null Funciton: putative 4-hydroxybenzoyl-CoA thioesterase
	Sala_3159	acdH3	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Sala_3158	acdA3	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	Sala_3157		3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	Sala_3156		putative 4-hydroxybenzoyl-CoA thioesterase
Position: -75 Score: 5.6 Sequence: CCTTACGTTTACGTAAAG Locus tag: Sala_0583 Name: acdB4 Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
	Sala_0583	acdB4	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17)
Position: -34 Score: 6 Sequence: GTTTACGTGAACGTAAAG Position: -28 Score: 4.4 Sequence: GTGAACGTAAAGGGAAAG Locus tag: Sala_3074 Name: acdH4 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) Locus tag: Sala_3073 Name: null Funciton: Alcohol dehydrogenase (EC 1.1.1.1) Locus tag: Sala_3072 Name: null Funciton: Predicted aminoglycoside phosphotransferase
	Sala_3074	acdH4	Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Sala_3073		Alcohol dehydrogenase (EC 1.1.1.1)
	Sala_3072		Predicted aminoglycoside phosphotransferase
Position: -66 Score: 5.9 Sequence: GTTGACGTTTACGTAAGC Position: -60 Score: 5.4 Sequence: GTTTACGTAAGCGCAAAT Locus tag: Sala_0178 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Sala_0179 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	Sala_0178	etfB	Electron transfer flavoprotein, beta subunit
	Sala_0179	etfA	Electron transfer flavoprotein, alpha subunit

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Sphingopyxis alaskensis RB2256

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --