Regulon of LiuR in Erythrobacter sp. NAP1
| Regulator type: | Transcription factor |
| TF locus tag: | NAP1_05180 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 9 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Sphingomonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -52
Score: 5.5 Sequence: CTTTACGGATACGTCAAC
Locus tag: NAP1_15383
Name: acdB Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: NAP1_15388
Name: null Funciton: Acetyl-CoA acetyltransferase |
|||
|
acdB
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Acetyl-CoA acetyltransferase
|
|||
|
Position: -104
Score: 6 Sequence: CTTGACGTTTACGTAAAC
Position: -98
Score: 5.7 Sequence: GTTTACGTAAACGCAAGC
Locus tag: NAP1_12578
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: NAP1_12583
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
|||
|
etfB
|
Electron transfer flavoprotein, beta subunit
|
||
|
etfA
|
Electron transfer flavoprotein, alpha subunit
|
||
|
Position: -61
Score: 4.5 Sequence: AATGACGATAACGTAAGC
Position: -55
Score: 5 Sequence: GATAACGTAAGCGTCAAC
Locus tag: NAP1_10032
Name: acdQ Funciton: Acyl-CoA dehydrogenases
Locus tag: NAP1_10027
Name: null Funciton: GTPases - Sulfate adenylate transferase subunit 1
Locus tag: NAP1_10022
Name: acdP Funciton: Acyl-CoA dehydrogenase family protein
Locus tag: NAP1_10017
Name: null Funciton: short-chain dehydrogenase/reductase SDR |
|||
|
acdQ
|
Acyl-CoA dehydrogenases
|
||
|
GTPases - Sulfate adenylate transferase subunit 1
|
|||
|
acdP
|
Acyl-CoA dehydrogenase family protein
|
||
|
short-chain dehydrogenase/reductase SDR
|
|||
|
Position: -37
Score: 5.6 Sequence: CTTGACGTTTGCGTAAGC
Locus tag: NAP1_01850
Name: null Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-) |
|||
|
Acyl-CoA thioesterase II (EC 3.1.2.-)
|
|||
|
Position: -70
Score: 5.4 Sequence: GTTTACGCGAGCGTAAAG
Locus tag: NAP1_08185
Name: null Funciton: Possible 3-oxo-(Acyl) acyl carrier protein reductase |
|||
|
Possible 3-oxo-(Acyl) acyl carrier protein reductase
|
|||
|
Position: -32
Score: 5.3 Sequence: GTTTACGTAAACGGGAAG
Locus tag: NAP1_00605
Name: acdA3 Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: NAP1_00610
Name: null Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
|||
|
acdA3
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
|
|||
|
Position: -60
Score: 4.9 Sequence: GTTGACGGACACGTCACC
Locus tag: NAP1_09247
Name: fpr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Locus tag: NAP1_09242
Name: null Funciton: hypothetical protein
Locus tag: NAP1_09237
Name: acdH3 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fpr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
hypothetical protein
|
|||
|
acdH3
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -90
Score: 5.6 Sequence: GTTGACGTATCCGTAAAG
Locus tag: NAP1_15378
Name: acdA Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: NAP1_15373
Name: null Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|||
|
acdA
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
|
|||
|
Position: -36
Score: 5.8 Sequence: CTTGACGTTCACGTAAAG
Position: -30
Score: 5.4 Sequence: GTTCACGTAAAGGTAAAG
Locus tag: NAP1_05180
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: NAP1_05185
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|||
|
liuR
|
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
|
||
|
acdH
|
Acyl-CoA dehydrogenase (EC 1.3.99.3)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |