Regulon of LiuR in Novosphingobium aromaticivorans DSM 12444
| Regulator type: | Transcription factor |
| TF locus tag: | Saro_2106 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Sphingomonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -315
Score: 5.1 Sequence: CTTTACGTAAAGGTCATG
Locus tag: Saro_3457
Name: paaG Funciton: Enoyl-CoA hydratase/carnithine racemase |
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paaG
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Enoyl-CoA hydratase/carnithine racemase
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Position: -37
Score: 5 Sequence: ATTGACGCTTACGTAAGG
Position: -31
Score: 4.5 Sequence: GCTTACGTAAGGGGCAGG
Locus tag: Saro_2106
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Saro_2105
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -36
Score: 5.2 Sequence: GTTGACGTAAACGGGAGC
Locus tag: Saro_1064
Name: null Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-) |
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Acyl-CoA thioesterase II (EC 3.1.2.-)
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Position: -63
Score: 5.9 Sequence: GTTGACGTTTACGTAAGC
Position: -57
Score: 5.4 Sequence: GTTTACGTAAGCGCAAAT
Locus tag: Saro_3169
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Saro_3168
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -168
Score: 5.3 Sequence: TTTTACGTTTACGTCAGC
Position: -162
Score: 4.3 Sequence: GTTTACGTCAGCTTAGGG
Locus tag: Saro_0999
Name: acdQ Funciton: Acyl-CoA dehydrogenases
Locus tag: Saro_1000
Name: acdP Funciton: Acyl-CoA dehydrogenase family protein
Locus tag: Saro_1001
Name: null Funciton: short-chain dehydrogenase/reductase SDR |
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acdQ
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Acyl-CoA dehydrogenases
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acdP
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Acyl-CoA dehydrogenase family protein
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short-chain dehydrogenase/reductase SDR
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |