Regulon of LiuR in Novosphingobium aromaticivorans DSM 12444

Properties
Regulator type:	Transcription factor
TF locus tag:	Saro_2106
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Sphingomonadales
Statistics of regulated genes:
- Genes	9
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Sphingomonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -315 Score: 5.1 Sequence: CTTTACGTAAAGGTCATG Locus tag: Saro_3457 Name: paaG Funciton: Enoyl-CoA hydratase/carnithine racemase
	Saro_3457	paaG	Enoyl-CoA hydratase/carnithine racemase
Position: -37 Score: 5 Sequence: ATTGACGCTTACGTAAGG Position: -31 Score: 4.5 Sequence: GCTTACGTAAGGGGCAGG Locus tag: Saro_2106 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: Saro_2105 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Saro_2106	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Saro_2105	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -36 Score: 5.2 Sequence: GTTGACGTAAACGGGAGC Locus tag: Saro_1064 Name: null Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-)
	Saro_1064		Acyl-CoA thioesterase II (EC 3.1.2.-)
Position: -63 Score: 5.9 Sequence: GTTGACGTTTACGTAAGC Position: -57 Score: 5.4 Sequence: GTTTACGTAAGCGCAAAT Locus tag: Saro_3169 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Saro_3168 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	Saro_3169	etfB	Electron transfer flavoprotein, beta subunit
	Saro_3168	etfA	Electron transfer flavoprotein, alpha subunit
Position: -168 Score: 5.3 Sequence: TTTTACGTTTACGTCAGC Position: -162 Score: 4.3 Sequence: GTTTACGTCAGCTTAGGG Locus tag: Saro_0999 Name: acdQ Funciton: Acyl-CoA dehydrogenases Locus tag: Saro_1000 Name: acdP Funciton: Acyl-CoA dehydrogenase family protein Locus tag: Saro_1001 Name: null Funciton: short-chain dehydrogenase/reductase SDR
	Saro_0999	acdQ	Acyl-CoA dehydrogenases
	Saro_1000	acdP	Acyl-CoA dehydrogenase family protein
	Saro_1001		short-chain dehydrogenase/reductase SDR

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD