Regulons of Azorhizobium caulinodans ORS 571
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BioR |
|
Biotin biosynthesis |
3 |
2 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
1 |
1 |
| TF |
FixJ |
Oxygen |
Oxidative stress response |
2 |
4 |
| TF |
FnrN/FixK/AadR |
Oxygen |
Oxidative stress response; Nitrogen fixation |
15 |
6 |
| TF |
GulR |
|
Glucarate utilization; Galactarate utilization |
3 |
2 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
IdnR |
L-idonate |
Idonate utilization |
2 |
2 |
| TF |
Irr |
Heme |
Iron homeostasis |
22 |
10 |
| TF |
KglR |
|
Sugar utilization |
1 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
20 |
12 |
| TF |
MdcY |
|
Malonate metabolism |
2 |
2 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
1 |
1 |
| TF |
Mur |
Iron ion, (Fe2+) |
Manganese homeostasis |
1 |
1 |
| TF |
NifA |
|
Nitrogen fixation |
20 |
20 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
1 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
8 |
6 |
| TF |
OapR |
|
Amino acid metabolism |
1 |
1 |
| TF |
PckR |
|
Central carbohydrate metabolism |
13 |
2 |
| TF |
PdxQ3 |
|
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
PdxW |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
| TF |
PhnF |
|
Phosphonate utilization |
5 |
2 |
| TF |
RL3595 |
|
Sugar utilization |
2 |
2 |
| TF |
SMb20039 |
|
|
1 |
1 |
| TF |
SMb20667 |
|
Sugar utilization |
2 |
4 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
3 |
2 |
| TF |
YrdX |
|
|
1 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
10 |
2 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
2 |
4 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
2 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
7 |
2 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
2 |
1 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
| RNA |
speF |
|
Ornithine degradation |
1 |
1 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
2 |
1 |
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