Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Alteromonadales bacterium TW-7

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 7 11
TF BglR Beta-glucoside Beta-glucosides utilization 6 9
TF BirA Biotin Biotin biosynthesis 2 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 9
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 7 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 18
TF HmgS Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 3 3
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 7 6
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 6
TF LexA DNA damage SOS response 13 14
TF LiuR Branched-chain amino acid degradation 11 13
TF MalR Maltose Maltose utilization; Maltodextrin utilization 7 6
TF ManR1 Mannose Mannosides utilization; Mannose utilization 2 1
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 13 12
TF MetR Homocysteine Methionine biosynthesis 4 4
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 4 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 2 2
TF PrpR 2-methylcitrate Methylcitrate utilization 2 3
TF RutR Uracil Pyrimidine utilization 4 3
TF ScrR Sucrose Sucrose utilization 6 3
TF SoxR Paraquat Superoxide stress response 1 1
TF TyrR1 Tyrosine; Phenylalanine Aromatic amino acid metabolism 6 6
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 9
RNA TPP 3 1
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