Regulon of HypR in Alteromonadales bacterium TW-7
| Regulator type: | Transcription factor |
| TF locus tag: | ATW7_13103 |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -45
Score: 4.7 Sequence: ACTGTATACAAT
Locus tag: ATW7_13098
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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hypD
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
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Position: -33
Score: 3.9 Sequence: AATGTATGCTAA
Locus tag: ATW7_13103
Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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hypR
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Predicted regulator for proline and hydrohyproline utilization, GntR family
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Position: -276
Score: 5.3 Sequence: ATTGTATACAAT
Locus tag: ATW7_13113
Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: ATW7_13108
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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hypE
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
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hypH
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
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Position: -86
Score: 5.3 Sequence: ATTGTATACAAT
Locus tag: ATW7_13093
Name: omp, COG1629 (CirA) Funciton: TonB-dependent receptor, collagen-binding surface protein |
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omp, COG1629 (CirA)
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TonB-dependent receptor, collagen-binding surface protein
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Position: -36
Score: 5.3 Sequence: ATTGTATACAAT
Locus tag: ATW7_13133
Name: ATW7_13133 Funciton: hypothetical protein |
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ATW7_13133
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hypothetical protein
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Position: -211
Score: 5.3 Sequence: ATTGTATACAAT
Locus tag: ATW7_13123
Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Locus tag: ATW7_13128
Name: prdP Funciton: Proline dipeptidase |
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hypO
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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prdP
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Proline dipeptidase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |