Regulon of HypR in Alteromonadales bacterium TW-7

Properties
Regulator type:	Transcription factor
TF locus tag:	ATW7_13103
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Regulog:	HypR - Alteromonadales
Statistics of regulated genes:
- Genes	8
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -45 Score: 4.7 Sequence: ACTGTATACAAT Locus tag: ATW7_13098 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	ATW7_13098	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Position: -33 Score: 3.9 Sequence: AATGTATGCTAA Locus tag: ATW7_13103 Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
	ATW7_13103	hypR	Predicted regulator for proline and hydrohyproline utilization, GntR family
Position: -276 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: ATW7_13113 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: ATW7_13108 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	ATW7_13113	hypE	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	ATW7_13108	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -86 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: ATW7_13093 Name: omp, COG1629 (CirA) Funciton: TonB-dependent receptor, collagen-binding surface protein
	ATW7_13093	omp, COG1629 (CirA)	TonB-dependent receptor, collagen-binding surface protein
Position: -36 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: ATW7_13133 Name: ATW7_13133 Funciton: hypothetical protein
	ATW7_13133	ATW7_13133	hypothetical protein
Position: -211 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: ATW7_13123 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster Locus tag: ATW7_13128 Name: prdP Funciton: Proline dipeptidase
	ATW7_13123	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	ATW7_13128	prdP	Proline dipeptidase

Export
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