Regulog HypR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | ||
| Alteromonas macleodii 'Deep ecotype' | ||
| Glaciecola sp. HTCC2999 | ||
| Colwellia psychrerythraea 34H | 6 | 5 |
| Alteromonadales bacterium TW-7 | 8 | 6 |
| Pseudoalteromonas haloplanktis TAC125 | ||
| Pseudoalteromonas tunicata D2 | 9 | 6 |
| Idiomarina baltica OS145 | ||
| Idiomarina loihiensis L2TR |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| omp, COG1629 (CirA) |
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Colwellia psychrerythraea 34H Site: position = -162 score = 4.16637 sequence = ATAATATACAAT Gene: CPS_4791: TonB-dependent receptor, collagen-binding surface protein |
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Alteromonadales bacterium TW-7 Site: position = -86 score = 5.32149 sequence = ATTGTATACAAT Gene: ATW7_13093: TonB-dependent receptor, collagen-binding surface protein |
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Pseudoalteromonas tunicata D2 Site: position = -54 score = 5.32149 sequence = ATTGTATACAAT Gene: PTD2_02396: TonB-dependent receptor, collagen-binding surface protein |
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TonB-dependent receptor, collagen-binding surface protein |
| CRON 2. | ||||||||||
| ATW7_13133 |
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Alteromonadales bacterium TW-7 Site: position = -36 score = 5.32149 sequence = ATTGTATACAAT Gene: ATW7_13133: hypothetical protein |
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hypothetical protein |
| CRON 3. | ||||||||||
| hypD |
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Colwellia psychrerythraea 34H Site: position = -100 score = 5.32149 sequence = ATTGTATACAAT Gene: CPS_1449: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Alteromonadales bacterium TW-7 Site: position = -45 score = 4.7364 sequence = ACTGTATACAAT Gene: ATW7_13098: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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Pseudoalteromonas tunicata D2 Site: position = -65 score = 5.01168 sequence = ATTGCATACAAT Gene: PTD2_14397: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| hypE |
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Gene: CPS_1450: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Alteromonadales bacterium TW-7 Site: position = -276 score = 5.32149 sequence = ATTGTATACAAT Gene: ATW7_13113: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Gene: PTD2_14402: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| hypH |
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Gene: CPS_1451: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
Gene: ATW7_13108: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Gene: PTD2_14407: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
| hypR |
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*
Colwellia psychrerythraea 34H Site: position = 6 score = 4.03261 sequence = ATAGTATATAAA Gene: CPS_4142: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Alteromonadales bacterium TW-7 Site: position = -33 score = 3.89307 sequence = AATGTATGCTAA Gene: ATW7_13103: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Gene: PTD2_14412: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| ypdF |
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Pseudoalteromonas tunicata D2 Site: position = -69 score = 5.01168 sequence = ATTGTATGCAAT Gene: PTD2_06274: Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific) |
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Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific) |
| CRON 4. | ||||||||||
| colA2 |
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*
Colwellia psychrerythraea 34H Site: position = -49 score = 5.01168 sequence = ATTGTATGCAAT Site: position = -32 score = 4.33388 sequence = ATTTTATTCAAT Gene: CPS_2237: Microbial collagenase, secreted (EC 3.4.24.3) |
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Pseudoalteromonas tunicata D2 Site: position = -179 score = 4.86675 sequence = ATTGTATACATT Site: position = -132 score = 4.16514 sequence = AATGTAAACAAT Gene: PTD2_04421: Microbial collagenase, secreted (EC 3.4.24.3) |
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Microbial collagenase, secreted (EC 3.4.24.3) |
| CRON 5. | ||||||||||
| hypO |
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Gene: CPS_1447: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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Alteromonadales bacterium TW-7 Site: position = -211 score = 5.32149 sequence = ATTGTATACAAT Gene: ATW7_13123: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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Pseudoalteromonas tunicata D2 Site: position = 6 score = 5.01168 sequence = ATTGTATGCAAT Gene: PTD2_14392: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
| prdP |
Gene: Patl_3777: Proline dipeptidase |
Gene: MADE_01522: Proline dipeptidase |
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Colwellia psychrerythraea 34H Site: position = -115 score = 4.69346 sequence = AGTGTATACAAT Gene: CPS_1459: Proline dipeptidase |
2
Alteromonadales bacterium TW-7 Gene: ATW7_13128: Proline dipeptidase Gene: ATW7_02617: Proline dipeptidase |
Gene: PSHAb0215: Proline dipeptidase |
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Pseudoalteromonas tunicata D2 Site: position = -144 score = 3.66632 sequence = ATGTTATACAGT Site: position = -128 score = 3.95981 sequence = ATTGTATAATTT Site: position = -24 score = 5.01168 sequence = ATTGCATACAAT Gene: PTD2_03171: Proline dipeptidase |
Gene: OS145_00640: Proline dipeptidase |
Gene: IL0630: Proline dipeptidase |
Proline dipeptidase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |