Profile of regulator HypR in Alteromonadales
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Alteromonadales |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Colwellia psychrerythraea 34H | |||||
| CPS_2237 | colA2 | -49 | 5 | ATTGTATGCAAT | |
| CPS_2237 | colA2 | -32 | 4.3 | ATTTTATTCAAT | |
| CPS_1449 | hypD | -100 | 5.3 | ATTGTATACAAT | |
| CPS_4142 | hypR | 6 | 4 | ATAGTATATAAA | |
| CPS_4791 | omp, COG1629 (CirA) | -162 | 4.2 | ATAATATACAAT | |
| CPS_1459 | prdP | -115 | 4.7 | AGTGTATACAAT | |
| Alteromonadales bacterium TW-7 | |||||
| ATW7_13113 | hypE | -276 | 5.3 | ATTGTATACAAT | |
| ATW7_13133 | ATW7_13133 | -36 | 5.3 | ATTGTATACAAT | |
| ATW7_13098 | hypD | -45 | 4.7 | ACTGTATACAAT | |
| ATW7_13123 | hypO | -211 | 5.3 | ATTGTATACAAT | |
| ATW7_13103 | hypR | -33 | 3.9 | AATGTATGCTAA | |
| ATW7_13093 | omp, COG1629 (CirA) | -86 | 5.3 | ATTGTATACAAT | |
| Pseudoalteromonas tunicata D2 | |||||
| PTD2_14397 | hypD | -65 | 5 | ATTGCATACAAT | |
| PTD2_04421 | colA2 | -179 | 4.9 | ATTGTATACATT | |
| PTD2_04421 | colA2 | -132 | 4.2 | AATGTAAACAAT | |
| PTD2_06274 | ypdF | -69 | 5 | ATTGTATGCAAT | |
| PTD2_03171 | prdP | -144 | 3.7 | ATGTTATACAGT | |
| PTD2_03171 | prdP | -128 | 4 | ATTGTATAATTT | |
| PTD2_03171 | prdP | -24 | 5 | ATTGCATACAAT | |
| PTD2_14392 | hypO | 6 | 5 | ATTGTATGCAAT | |
| PTD2_02396 | omp, COG1629 (CirA) | -54 | 5.3 | ATTGTATACAAT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |