Regulon of HypR in Pseudoalteromonas tunicata D2
| Regulator type: | Transcription factor |
| TF locus tag: | PTD2_14412 |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -69
Score: 5 Sequence: ATTGTATGCAAT
Locus tag: PTD2_06274
Name: ypdF Funciton: Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific) |
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ypdF
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Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
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Position: -65
Score: 5 Sequence: ATTGCATACAAT
Locus tag: PTD2_14397
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Locus tag: PTD2_14402
Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: PTD2_14407
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: PTD2_14412
Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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hypD
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
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hypE
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
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hypH
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
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hypR
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Predicted regulator for proline and hydrohyproline utilization, GntR family
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Position: -54
Score: 5.3 Sequence: ATTGTATACAAT
Locus tag: PTD2_02396
Name: omp, COG1629 (CirA) Funciton: TonB-dependent receptor, collagen-binding surface protein |
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omp, COG1629 (CirA)
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TonB-dependent receptor, collagen-binding surface protein
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Position: -179
Score: 4.9 Sequence: ATTGTATACATT
Position: -132
Score: 4.2 Sequence: AATGTAAACAAT
Locus tag: PTD2_04421
Name: colA2 Funciton: Microbial collagenase, secreted (EC 3.4.24.3) |
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colA2
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Microbial collagenase, secreted (EC 3.4.24.3)
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Position: 6
Score: 5 Sequence: ATTGTATGCAAT
Locus tag: PTD2_14392
Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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hypO
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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Position: -144
Score: 3.7 Sequence: ATGTTATACAGT
Position: -128
Score: 4 Sequence: ATTGTATAATTT
Position: -24
Score: 5 Sequence: ATTGCATACAAT
Locus tag: PTD2_03171
Name: prdP Funciton: Proline dipeptidase |
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prdP
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Proline dipeptidase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |