Regulon of HypR in Pseudoalteromonas tunicata D2

Properties
Regulator type:	Transcription factor
TF locus tag:	PTD2_14412
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Regulog:	HypR - Alteromonadales
Statistics of regulated genes:
- Genes	9
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -69 Score: 5 Sequence: ATTGTATGCAAT Locus tag: PTD2_06274 Name: ypdF Funciton: Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
	PTD2_06274	ypdF	Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)
Position: -65 Score: 5 Sequence: ATTGCATACAAT Locus tag: PTD2_14397 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted Locus tag: PTD2_14402 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: PTD2_14407 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible Locus tag: PTD2_14412 Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
	PTD2_14397	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	PTD2_14402	hypE	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	PTD2_14407	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	PTD2_14412	hypR	Predicted regulator for proline and hydrohyproline utilization, GntR family
Position: -54 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: PTD2_02396 Name: omp, COG1629 (CirA) Funciton: TonB-dependent receptor, collagen-binding surface protein
	PTD2_02396	omp, COG1629 (CirA)	TonB-dependent receptor, collagen-binding surface protein
Position: -179 Score: 4.9 Sequence: ATTGTATACATT Position: -132 Score: 4.2 Sequence: AATGTAAACAAT Locus tag: PTD2_04421 Name: colA2 Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
	PTD2_04421	colA2	Microbial collagenase, secreted (EC 3.4.24.3)
Position: 6 Score: 5 Sequence: ATTGTATGCAAT Locus tag: PTD2_14392 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	PTD2_14392	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -144 Score: 3.7 Sequence: ATGTTATACAGT Position: -128 Score: 4 Sequence: ATTGTATAATTT Position: -24 Score: 5 Sequence: ATTGCATACAAT Locus tag: PTD2_03171 Name: prdP Funciton: Proline dipeptidase
	PTD2_03171	prdP	Proline dipeptidase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD