Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Staphylococcus carnosus subsp. carnosus TM300

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgrA Virulence; Quorum sensing 1 1
TF ArcR Arginine Arginine degradation 1 1
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 5 8
TF BirA Biotin Biotin biosynthesis 5 4
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-diphosphate Carbon catabolism 65 56
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Branched-chain amino acids Amino acid metabolism 65 76
TF CtsR Heat shock Heat shock response 6 7
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 11 11
TF CzrA Zinc ion, (Zn2+) Zinc resistance 1 1
TF FapR Malonyl-CoA; Malonyl-ACP Fatty acid biosynthesis 5 3
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 14 15
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 1 1
TF GltC 2-oxoglutarate; Glutamate Glutamate metabolism 2 4
TF GntR Gluconate Gluconate utilization 1 1
TF HisR Histidine Histidine biosynthesis 4 4
TF HrcA Heat shock Heat shock response 2 2
TF HssR HssS, sensor histidine kinase (heme) Heme efflux 1 1
TF HutR Histidine Histidine utilization 2 2
TF LexA DNA damage SOS response 10 11
TF ManR ManP, mannose-specific enzyme IIBCA PTS component; HPr, phosphocarrier protein Mannose utilization 1 1
TF MepR Bis-indoles; Distamycin Multidrug resistance 2 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NanR N-acetylmannosamine-6-phosphate Sialic acid utilization; N-acetylglucosamine utilization 5 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NreC NreB, sensor histidine kinase (Nitrate, Nitrite) Nitrate and nitrite respiration 3 3
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response 8 9
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 4 3
TF RbsR Ribose Ribose utilization 1 1
TF RbsR2 Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 13 7
TF SaeR SaeS, sensor histidine kinase Virulence 3 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF YdfD/YisV Metabolite transport 1 1
TF YtrA Hypothetical ABC transporter 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 8 8
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 1 1
RNA PyrR PyrR Pyrimidine metabolism 2 2
RNA SAM S-adenosylmethionine Methionine biosynthesis 9 8
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 1 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 2 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 2
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 1 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 1 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 5
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA yybP-ykoY 1 1
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