Regulon of CcpA in Staphylococcus carnosus subsp. carnosus TM300

Properties
Regulator type:	Transcription factor
TF locus tag:	Sca_1342
Regulator family:	LacI
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	HPr, phosphocarrier protein; Fructose-1,6-diphosphate
Regulog:	CcpA - Staphylococcaceae
Statistics of regulated genes:
- Genes	100
- Operons	53
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 391 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By trascription factor - CcpA
By TF family - LacI
By effector - HPr, phosphocarrier protein
By effector - Fructose-1,6-diphosphate
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: -116 Score: 4.8 Sequence: TTGACAACGCTTTCAT Position: -85 Score: 4 Sequence: ATGTAAACGATTGTAT Locus tag: Sca_2095 Name: xylB Funciton: putative xylulokinase
	Sca_2095	xylB	putative xylulokinase
Position: -71 Score: 4.9 Sequence: TTGAAAGCCTTTACAT Locus tag: Sca_0108 Name: treP Funciton: phosphotransferase system trehalose-specific enzyme IIBC component homolog Locus tag: Sca_0109 Name: treP Funciton: phosphotransferase system trehalose-specific enzyme IIBC component homolog Locus tag: Sca_0110 Name: treA Funciton: trehalose-6-phosphate hydrolase Locus tag: Sca_0111 Name: treR Funciton: trehalose-6-phosphate-responsive transcriptional regulator
	Sca_0108	treP	phosphotransferase system trehalose-specific enzyme IIBC component homolog
	Sca_0109	treP	phosphotransferase system trehalose-specific enzyme IIBC component homolog
	Sca_0110	treA	trehalose-6-phosphate hydrolase
	Sca_0111	treR	trehalose-6-phosphate-responsive transcriptional regulator
Position: -163 Score: 4.3 Sequence: ATGAAAACTGTTTCAA Locus tag: Sca_0882 Name: sucC Funciton: succinyl-CoA synthetase beta subunit Locus tag: Sca_0883 Name: sucD Funciton: succinyl-CoA synthetase alpha subunit
	Sca_0882	sucC	succinyl-CoA synthetase beta subunit
	Sca_0883	sucD	succinyl-CoA synthetase alpha subunit
Position: -151 Score: 4.6 Sequence: ACGAAAACGTTTTCAT Locus tag: Sca_2418 Name: SSP0523 Funciton: putative regulatory protein (DeoR family)
	Sca_2418	SSP0523	putative regulatory protein (DeoR family)
Position: -60 Score: 5.3 Sequence: TTGTAAGCGTTTACAT Locus tag: Sca_2373 Name: SH0372 Funciton: hypothetical Zn-dependent hydrolase Locus tag: Sca_2372 Name: adhC Funciton: Zn-dependent alcohol dehydrogenase, class III
	Sca_2373	SH0372	hypothetical Zn-dependent hydrolase
	Sca_2372	adhC	Zn-dependent alcohol dehydrogenase, class III
Position: -254 Score: 4.5 Sequence: GAGAAAGCGCTTTCTA Locus tag: Sca_1866 Name: SE1944 Funciton: putative glycosyltransferase
	Sca_1866	SE1944	putative glycosyltransferase
Position: -47 Score: 4.7 Sequence: ATGAAAGCGTATACTT Locus tag: Sca_1871 Name: SE0247 Funciton: hypothetical protein
	Sca_1871	SE0247	hypothetical protein
Position: -291 Score: 5 Sequence: TTGTAAACGCTTTCTA Locus tag: Sca_0765 Name: sdhC Funciton: succinate dehydrogenase cytochrome b subunit Locus tag: Sca_0766 Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit Locus tag: Sca_0767 Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein subunit
	Sca_0765	sdhC	succinate dehydrogenase cytochrome b subunit
	Sca_0766	sdhA	succinate dehydrogenase flavoprotein subunit
	Sca_0767	sdhB	succinate dehydrogenase iron-sulfur protein subunit
Position: -138 Score: 4.9 Sequence: ATGTATACGTTTACAT Locus tag: Sca_1495 Name: sdcS Funciton: sodium-dependent dicarboxylate transporter
	Sca_1495	sdcS	sodium-dependent dicarboxylate transporter
Position: -64 Score: 5 Sequence: TTGAAAACGTTTTCTA Locus tag: Sca_1673 Name: SAS074 Funciton: hypothetical protein
	Sca_1673	SAS074	hypothetical protein
Position: -249 Score: 5 Sequence: ATGAAAGCGCATACAT Locus tag: Sca_1812 Name: SA2109 Funciton: probable amino-acid or metabolite transporter
	Sca_1812	SA2109	probable amino-acid or metabolite transporter
Position: -119 Score: 5.1 Sequence: ATGTAAGCGTTTACTT Locus tag: Sca_1807 Name: SA2105 Funciton: hypothetical protein
	Sca_1807	SA2105	hypothetical protein
Position: -141 Score: 5 Sequence: TAGAAAACGTTTTCAA Locus tag: Sca_1672 Name: SA1975 Funciton: predicted membrane-bound hydrolase Locus tag: Sca_1671 Name: SA1974 Funciton: UDP-N-acetylglucosamine pyrophosphorylase Locus tag: Sca_1670 Name: SA1973 Funciton: hemolysin III
	Sca_1672	SA1975	predicted membrane-bound hydrolase
	Sca_1671	SA1974	UDP-N-acetylglucosamine pyrophosphorylase
	Sca_1670	SA1973	hemolysin III
Position: -292 Score: 4.7 Sequence: ATGGAAAGGCTTACAT Locus tag: Sca_2042 Name: SA1437 Funciton: allophanate hydrolase subunit 1 Locus tag: Sca_2041 Name: SA1436 Funciton: allophanate hydrolase subunit 2 Locus tag: Sca_2040 Name: SA1435 Funciton: acetyl-CoA carboxylase (biotin carboxyl carrier subunit) Locus tag: Sca_2039 Name: SA1434 Funciton: acetyl-CoA carboxylase (biotin carboxylase subunit) Locus tag: Sca_2038 Name: SA1433 Funciton: putative lactame utilization protein Locus tag: Sca_2037 Name: SA1432 Funciton: putative transporter
	Sca_2042	SA1437	allophanate hydrolase subunit 1
	Sca_2041	SA1436	allophanate hydrolase subunit 2
	Sca_2040	SA1435	acetyl-CoA carboxylase (biotin carboxyl carrier subunit)
	Sca_2039	SA1434	acetyl-CoA carboxylase (biotin carboxylase subunit)
	Sca_2038	SA1433	putative lactame utilization protein
	Sca_2037	SA1432	putative transporter
Position: -30 Score: 4.7 Sequence: TTGTAAGCGCTTACTC Locus tag: Sca_0968 Name: SA1162 Funciton: hypothetical protein
	Sca_0968	SA1162	hypothetical protein
Position: -64 Score: 4.4 Sequence: TTGGTAACGATTTCAT Locus tag: Sca_0617 Name: SA0873 Funciton: DJ-1/PfpI family protein
	Sca_0617	SA0873	DJ-1/PfpI family protein
Position: -144 Score: 4.4 Sequence: ATGTAAGCGCTTTACT Locus tag: Sca_0213 Name: SA0511 Funciton: uncharacterized epimerase/dehydratase
	Sca_0213	SA0511	uncharacterized epimerase/dehydratase
Position: -63 Score: 5.3 Sequence: ATGTAAGCGTTTACAA Locus tag: Sca_2408 Name: SA0225 Funciton: short-chain acyl-CoA oxidase Locus tag: Sca_2409 Name: fadN Funciton: putative 3-hydroxyacyl-CoA dehydrogenase Locus tag: Sca_2410 Name: fadA Funciton: putative acetyl-CoA acetyltransferase
	Sca_2408	SA0225	short-chain acyl-CoA oxidase
	Sca_2409	fadN	putative 3-hydroxyacyl-CoA dehydrogenase
	Sca_2410	fadA	putative acetyl-CoA acetyltransferase
Position: -85 Score: 5.1 Sequence: ATGAAAGCGATTACAA Locus tag: Sca_2140 Name: SA0184 Funciton: hypothetical protein Locus tag: Sca_2139 Name: murQ Funciton: N-acetylmuramic acid 6-phosphate etherase Locus tag: Sca_2138 Name: murT Funciton: predicted N-acetylmuramate PTS system, IIBC components Locus tag: Sca_2137 Name: murR Funciton: predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
	Sca_2140	SA0184	hypothetical protein
	Sca_2139	murQ	N-acetylmuramic acid 6-phosphate etherase
	Sca_2138	murT	predicted N-acetylmuramate PTS system, IIBC components
	Sca_2137	murR	predicted N-acetylmuramate-6-phosphate-responsive transcriptional regulator, RpiR family
Position: -49 Score: 4.8 Sequence: ATGTAAGGGCTTTCTT Locus tag: Sca_0564 Name: rocA Funciton: 1-pyrroline-5-carboxylate dehydrogenase Locus tag: Sca_0565 Name: rocD Funciton: ornithine aminotransferase
	Sca_0564	rocA	1-pyrroline-5-carboxylate dehydrogenase
	Sca_0565	rocD	ornithine aminotransferase
Position: -101 Score: 4.9 Sequence: ATGAAAGCGTATACAT Locus tag: Sca_2421 Name: rbsU Funciton: ribose transporter RbsU Locus tag: Sca_2420 Name: rbsD Funciton: ribose permease Locus tag: Sca_2419 Name: rbsK Funciton: ribokinase
	Sca_2421	rbsU	ribose transporter RbsU
	Sca_2420	rbsD	ribose permease
	Sca_2419	rbsK	ribokinase
Position: -137 Score: 4.3 Sequence: ATGTAAACGCTTTACT Locus tag: Sca_1474 Name: putP Funciton: high affinity proline permease
	Sca_1474	putP	high affinity proline permease
Position: -71 Score: 4.9 Sequence: TTGTTAACGTTTTCAT Locus tag: Sca_1371 Name: putA Funciton: proline dehydrogenase
	Sca_1371	putA	proline dehydrogenase
Position: -44 Score: 4.6 Sequence: AATAAAACGTTTTCAT Locus tag: Sca_1332 Name: ptaA Funciton: PTS system N-acetylglucosamine-specific IIBC component Locus tag: Sca_1331 Name: SE1402 Funciton: hypothetical hydrolase
	Sca_1332	ptaA	PTS system N-acetylglucosamine-specific IIBC component
	Sca_1331	SE1402	hypothetical hydrolase
Position: -79 Score: 4.3 Sequence: TTGAAAACGCTTTACT Locus tag: Sca_1982 Name: pfoR Funciton: putative PTS transporter Locus tag: Sca_1981 Name: pfoR Funciton: putative PTS transporter Locus tag: Sca_1980 Name: sdaAB Funciton: L-serine dehydratase beta chain Locus tag: Sca_1979 Name: sdaAA Funciton: L-serine dehydratase alpha chain
	Sca_1982	pfoR	putative PTS transporter
	Sca_1981	pfoR	putative PTS transporter
	Sca_1980	sdaAB	L-serine dehydratase beta chain
	Sca_1979	sdaAA	L-serine dehydratase alpha chain
Position: -58 Score: 4.3 Sequence: GTGAAAACGGTAACAT Locus tag: Sca_2017 Name: pflB Funciton: Pyruvate formate lyase Locus tag: Sca_2016 Name: pflA Funciton: Pyruvate formate lyase activating enzyme
	Sca_2017	pflB	Pyruvate formate lyase
	Sca_2016	pflA	Pyruvate formate lyase activating enzyme
Position: -103 Score: 4.6 Sequence: TATAAAACGTTTACAT Locus tag: Sca_1304 Name: pfkA Funciton: 6-phosphofructokinase Locus tag: Sca_1303 Name: pykA Funciton: pyruvate kinase
	Sca_1304	pfkA	6-phosphofructokinase
	Sca_1303	pykA	pyruvate kinase
Position: -54 Score: 4.9 Sequence: ATGTAAAGGCTTACAA Locus tag: Sca_1390 Name: pckA Funciton: phosphoenolpyruvate carboxykinase
	Sca_1390	pckA	phosphoenolpyruvate carboxykinase
Position: -64 Score: 4.8 Sequence: TTGAAAGCGGTTTCTT Locus tag: Sca_2258 Name: nhaC Funciton: Na+/H+ antiporter NnaC homolog
	Sca_2258	nhaC	Na+/H+ antiporter NnaC homolog
Position: -152 Score: 4.9 Sequence: TTGTAAACGCTATCAT Locus tag: Sca_2390 Name: nanK Funciton: predicted N-acetyl-D-mannosamine kinase, ROK family
	Sca_2390	nanK	predicted N-acetyl-D-mannosamine kinase, ROK family
Position: -109 Score: 4.9 Sequence: ATGATAGCGTTTACAA Locus tag: Sca_2389 Name: nanA Funciton: N-acetylneuraminate lyase Locus tag: Sca_2388 Name: nanT Funciton: predicted sialic acid transporter
	Sca_2389	nanA	N-acetylneuraminate lyase
	Sca_2388	nanT	predicted sialic acid transporter
Position: -85 Score: 4.5 Sequence: TAGAAAGCGCTTTCTC Locus tag: Sca_1865 Name: mqo Funciton: malate:quinone oxidoreductase
	Sca_1865	mqo	malate:quinone oxidoreductase
Position: -39 Score: 5 Sequence: ATGTTAGCGCTTACAA Position: 6 Score: 4.3 Sequence: ATTTTAGCGATTACAT Locus tag: Sca_2440 Name: manP Funciton: PTS system mannose-specific EIIBCA component Locus tag: Sca_2439 Name: manA Funciton: mannose-6-phosphate isomerase
	Sca_2440	manP	PTS system mannose-specific EIIBCA component
	Sca_2439	manA	mannose-6-phosphate isomerase
Position: -52 Score: 3.8 Sequence: AGGAAAGCGTTATCCT Locus tag: Sca_2166 Name: ipdC Funciton: indole-3-pyruvate decarboxylase homolog
	Sca_2166	ipdC	indole-3-pyruvate decarboxylase homolog
Position: -58 Score: 4.7 Sequence: ATGTAAGCGTATACTT Locus tag: Sca_2466 Name: hutH Funciton: Histidine ammonia-lyase
	Sca_2466	hutH	Histidine ammonia-lyase
Position: -40 Score: 4.6 Sequence: ATGAAAACGTTTTCGT Locus tag: Sca_2417 Name: gutB Funciton: putative zinc-binding dehydrogenase Locus tag: Sca_2416 Name: csbX Funciton: putative alpha-ketoglutarate permease Locus tag: Sca_2415 Name: dhaK Funciton: PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK Locus tag: Sca_2414 Name: dhaL Funciton: PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL Locus tag: Sca_2413 Name: rpiB Funciton: putative ribose 5-phosphate isomerase
	Sca_2417	gutB	putative zinc-binding dehydrogenase
	Sca_2416	csbX	putative alpha-ketoglutarate permease
	Sca_2415	dhaK	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK
	Sca_2414	dhaL	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL
	Sca_2413	rpiB	putative ribose 5-phosphate isomerase
Position: -94 Score: 4.7 Sequence: TTGTAAACGATTTCTA Locus tag: Sca_1960 Name: gudP Funciton: glucarate transporter
	Sca_1960	gudP	glucarate transporter
Position: -53 Score: 4.7 Sequence: ATGTAAGCGGTTGCAA Locus tag: Sca_1950 Name: gntR Funciton: gluconate operon transcriptional repressor Locus tag: Sca_1949 Name: gntK Funciton: gluconokinase Locus tag: Sca_1948 Name: gntP Funciton: gluconate permease
	Sca_1950	gntR	gluconate operon transcriptional repressor
	Sca_1949	gntK	gluconokinase
	Sca_1948	gntP	gluconate permease
Position: -70 Score: 4.3 Sequence: ATGGAAGCGTTGTCTT Locus tag: Sca_1820 Name: glpT Funciton: glycerol-3-phosphate transporter
	Sca_1820	glpT	glycerol-3-phosphate transporter
Position: -126 Score: 4.8 Sequence: TTGACAACGCTTTCAT Locus tag: Sca_0948 Name: glpF Funciton: glycerol uptake facilitator Locus tag: Sca_0949 Name: glpK Funciton: glycerol kinase Locus tag: Sca_0950 Name: glpD Funciton: aerobic glycerol-3-phosphate dehydrogenase
	Sca_0948	glpF	glycerol uptake facilitator
	Sca_0949	glpK	glycerol kinase
	Sca_0950	glpD	aerobic glycerol-3-phosphate dehydrogenase
Position: -42 Score: 4.7 Sequence: ATGAAAGCCATTTCAA Locus tag: Sca_1301 Name: citZ Funciton: citrate synthase Locus tag: Sca_1300 Name: citC Funciton: isocitrate dehydrogenase
	Sca_1301	citZ	citrate synthase
	Sca_1300	citC	isocitrate dehydrogenase
Position: -64 Score: 5.1 Sequence: AAGTAAGCGTTTACAT Locus tag: Sca_2309 Name: cstA Funciton: carbon starvation protein CstA
	Sca_2309	cstA	carbon starvation protein CstA
Position: -61 Score: 4.9 Sequence: TTGTAAGGGTTTACAT Locus tag: Sca_2406 Name: fadX Funciton: putative acetyl-CoA transferase Locus tag: Sca_2407 Name: fadE Funciton: putative acyl-CoA synthetase
	Sca_2406	fadX	putative acetyl-CoA transferase
	Sca_2407	fadE	putative acyl-CoA synthetase
Position: -143 Score: 4.8 Sequence: TTGAATACGTTTTCAT Position: -102 Score: 4.3 Sequence: TTAAAACCGCTTACAT Locus tag: Sca_1628 Name: fbaA Funciton: fructose-bisphosphate aldolase
	Sca_1628	fbaA	fructose-bisphosphate aldolase
Position: -123 Score: 4.8 Sequence: TTGAAATCGTTTACTT Locus tag: Sca_1964 Name: fbp Funciton: fructose-bisphosphatase
	Sca_1964	fbp	fructose-bisphosphatase
Position: -44 Score: 4.3 Sequence: ATGTAAGCGGAAACAT Locus tag: Sca_0346 Name: fruR Funciton: transcription repressor of fructose operon, DeoR family Locus tag: Sca_0347 Name: fruB Funciton: fructose 1-phosphate kinase Locus tag: Sca_0348 Name: fruA Funciton: PTS system fructose-specific IIABC component
	Sca_0346	fruR	transcription repressor of fructose operon, DeoR family
	Sca_0347	fruB	fructose 1-phosphate kinase
	Sca_0348	fruA	PTS system fructose-specific IIABC component
Position: -68 Score: 4.5 Sequence: TTGTAATCCCTTACTT Locus tag: Sca_0991 Name: citB Funciton: aconitate hydratase
	Sca_0991	citB	aconitate hydratase
Position: -49 Score: 4.5 Sequence: AAGGAAGCGCTTACAC Locus tag: Sca_2257 Name: argF Funciton: ornithine carbamoyltransferase Locus tag: Sca_2256 Name: arcC Funciton: carbamate kinase Locus tag: Sca_2255 Name: arcD2 Funciton: arginine/ornithine antiporter
	Sca_2257	argF	ornithine carbamoyltransferase
	Sca_2256	arcC	carbamate kinase
	Sca_2255	arcD2	arginine/ornithine antiporter
Position: -47 Score: 4.6 Sequence: TTGCAAGGGCTTACAA Locus tag: Sca_2085 Name: arcA Funciton: arginine deiminase Locus tag: Sca_2084 Name: arcD Funciton: arginine/ornithine antiporter Locus tag: Sca_2083 Name: arcR Funciton: transcription regulator of arginine catabolism, Crp/Fnr family
	Sca_2085	arcA	arginine deiminase
	Sca_2084	arcD	arginine/ornithine antiporter
	Sca_2083	arcR	transcription regulator of arginine catabolism, Crp/Fnr family
Position: -113 Score: 4.3 Sequence: ATGTAAACGTTTTACT Locus tag: Sca_2103 Name: aldA Funciton: aldehyde dehydrogenase
	Sca_2103	aldA	aldehyde dehydrogenase
Position: -54 Score: 4.6 Sequence: ATGATTGCGCTTTCAT Locus tag: Sca_1314 Name: ald Funciton: alanine dehydrogenase
	Sca_1314	ald	alanine dehydrogenase
Position: -213 Score: 5 Sequence: TTGAAATCGTTTTCAT Locus tag: Sca_1339 Name: acuA Funciton: acetoin utilization protein AcuA Locus tag: Sca_1340 Name: acuC Funciton: acetoin utilization protein AcuC
	Sca_1339	acuA	acetoin utilization protein AcuA
	Sca_1340	acuC	acetoin utilization protein AcuC
Position: -34 Score: 5 Sequence: ATGAAAACGATTTCAA Locus tag: Sca_1338 Name: acsA Funciton: acetyl-CoA synthetase
	Sca_1338	acsA	acetyl-CoA synthetase

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Staphylococcus carnosus subsp. carnosus TM300

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --