Regulon of CymR in Staphylococcus carnosus subsp. carnosus TM300
| Regulator type: | Transcription factor |
| TF locus tag: | Sca_1238 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Cysteine metabolism |
| Effector: | O-acetyl-L-serine; CysK, cysteine synthetase |
| Regulog: | CymR - Staphylococcaceae |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - Rrf2
- By effector - O-acetyl-L-serine
- By effector - CysK, cysteine synthetase
- By pathway - Cysteine metabolism
| Locus Tag | Name | Function | |
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Position: -269
Score: 5 Sequence: TAAATACGATATATTTACTAAGGATTT
Position: -151
Score: 4.3 Sequence: TTTTACCTACATAACTACTATTTAAAA
Locus tag: Sca_0042
Name: tcyP Funciton: L-cystine uptake protein tcyP |
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tcyP
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L-cystine uptake protein tcyP
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Position: -40
Score: 5.4 Sequence: TTATTCCGATGAGAATGATAAGGATAA
Locus tag: Sca_1910
Name: tcyA Funciton: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA
Locus tag: Sca_1909
Name: tcyB Funciton: L-cystine uptake ABC transporter, permease protein TcyB
Locus tag: Sca_1908
Name: tcyC Funciton: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
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tcyA
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L-cystine uptake ABC transporter, L-cystine-binding protein TcyA
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tcyB
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L-cystine uptake ABC transporter, permease protein TcyB
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tcyC
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L-cystine uptake ABC transporter, ATP-binding protein TcyC
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Position: -56
Score: 4.4 Sequence: TTAATCCGAGTGATACACTAAACTTAA
Locus tag: Sca_1777
Name: SA2080 Funciton: putative acyl-CoA dehydrogenase |
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SA2080
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putative acyl-CoA dehydrogenase
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Position: -38
Score: 4.8 Sequence: TAAAACTTACTAACATTATCGGAAAAG
Locus tag: Sca_1551
Name: SA1850 Funciton: putative transporter for thiosulphate |
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SA1850
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putative transporter for thiosulphate
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Position: -110
Score: 4.7 Sequence: TTATCCCGAGTAAACTTATCAACTTAA
Locus tag: Sca_1637
Name: luxS Funciton: S-ribosylhomocysteinase |
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luxS
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S-ribosylhomocysteinase
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Position: -92
Score: 5.6 Sequence: TAATCCATATCAGTATAGTAGGAATAA
Locus tag: Sca_0086
Name: mccA Funciton: cystathionine beta-synthase
Locus tag: Sca_0087
Name: mccB Funciton: cystathionine gamma-lyase |
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mccA
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cystathionine beta-synthase
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mccB
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cystathionine gamma-lyase
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Position: -143
Score: 4.4 Sequence: GATATCCGATGAAATAGCTAAGATATA
Locus tag: Sca_0164
Name: cysK Funciton: cysteine synthase |
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cysK
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cysteine synthase
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Position: -105
Score: 5.4 Sequence: TAAATCCTTGTAAACCAATAAGAATAA
Locus tag: Sca_0062
Name: ytnM Funciton: conserved membrane protein YtnM
Locus tag: Sca_0063
Name: cysD Funciton: sulfate adenylyltransferase
Locus tag: Sca_0064
Name: cysC Funciton: adenylylsulfate kinase |
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ytnM
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conserved membrane protein YtnM
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cysD
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sulfate adenylyltransferase
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cysC
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adenylylsulfate kinase
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Position: -134
Score: 5.4 Sequence: TAATTCTTAGTAAACCTATTGGAATTA
Position: -52
Score: 5.9 Sequence: TAATTCCTACTAAAAAACTAAGAATAA
Locus tag: Sca_0059
Name: cysJ Funciton: sulfite reductase [NADPH] flavoprotein, alpha-component
Locus tag: Sca_0060
Name: cysI Funciton: sulfite reductase (NADPH) hemoprotein, beta-component
Locus tag: Sca_0061
Name: cysG Funciton: uroporphyrin-III C-methyltransferase |
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cysJ
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sulfite reductase [NADPH] flavoprotein, alpha-component
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cysI
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sulfite reductase (NADPH) hemoprotein, beta-component
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cysG
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uroporphyrin-III C-methyltransferase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |