Regulog CymR - Staphylococcaceae

Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - Rrf2
- By effector - O-acetyl-L-serine
- By effector - CysK, cysteine synthetase
- By pathway - Cysteine metabolism
Genome | Genes | Operons |
---|---|---|
Staphylococcus aureus subsp. aureus N315 | 21 | 12 |
Staphylococcus capitis SK14 | 20 | 9 |
Staphylococcus epidermidis ATCC 12228 | 21 | 10 |
Staphylococcus carnosus subsp. carnosus TM300 | 16 | 9 |
Staphylococcus haemolyticus JCSC1435 | 17 | 8 |
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 23 | 10 |
Macrococcus caseolyticus JCSC5402 | 10 | 6 |
Genes | Function | |||||||
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CRON 1. | ||||||||
tcyP |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -54 score = 5.7921 sequence = TTATTCTTAGCATACTAGTCGGAATTA Gene: SA0368: L-cystine uptake protein tcyP |
*
Staphylococcus capitis SK14 Site: position = -57 score = 5.09002 sequence = ATATCCTTATTATATATGTCGGAATAC Gene: STACA0001_1450: L-cystine uptake protein tcyP |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -56 score = 5.29314 sequence = TTATTCTTATTACATATGTCGGAATAC Gene: SE2354: L-cystine uptake protein tcyP |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -269 score = 5.03927 sequence = TAAATACGATATATTTACTAAGGATTT Site: position = -151 score = 4.29571 sequence = TTTTACCTACATAACTACTATTTAAAA Gene: Sca_0042: L-cystine uptake protein tcyP |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -49 score = 5.41275 sequence = TTATCCTTATTAAGTATGTCGGAATTA Gene: SH2589: L-cystine uptake protein tcyP |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -63 score = 4.61715 sequence = ATATCCTTAGTATACGTATCGGATTTC Gene: SSP2329: L-cystine uptake protein tcyP |
*
Macrococcus caseolyticus JCSC5402 Site: position = 32 score = 5.53366 sequence = TAATTCTTAgTAtTcTtATAGGAtTac Gene: MCCL_0267: L-cystine uptake protein tcyP |
L-cystine uptake protein tcyP |
CRON 2. | ||||||||
tcyA |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -40 score = 6.18547 sequence = TTATTCCGATTAGAATAATAAGAATAA Gene: SA2202: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Staphylococcus capitis SK14 Site: position = -40 score = 6.04113 sequence = TTATTCCGATTAGAATAATAAGATTAA Gene: STACA0001_1063: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -40 score = 6.18547 sequence = TTATTCCGATTAGAATAATAAGAATAA Gene: SE1993: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -40 score = 5.35489 sequence = TTATTCCGATGAGAATGATAAGGATAA Gene: Sca_1910: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -41 score = 5.90865 sequence = TTATTCTGACTAATCTAATAGGAATAT Gene: SH0639: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -37 score = 5.81712 sequence = TTATTCCGATAAGAATAATAAGAATAG Gene: SSP0242: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
*
Macrococcus caseolyticus JCSC5402 Site: position = -38 score = 5.25548 sequence = CTATTCCGAGTAAATTGATATGAATAG Gene: MCCL_1425: L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
L-cystine uptake ABC transporter, L-cystine-binding protein TcyA |
tcyB |
Gene: SA2201: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: STACA0001_1064: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: SE1992: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: Sca_1909: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: SH0640: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: SSP0243: L-cystine uptake ABC transporter, permease protein TcyB |
Gene: MCCL_1424: L-cystine uptake ABC transporter, permease protein TcyB |
L-cystine uptake ABC transporter, permease protein TcyB |
tcyC |
Gene: SA2200: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: STACA0001_1065: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: SE1991: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: Sca_1908: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: SH0641: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: SSP0244: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
Gene: MCCL_1423: L-cystine uptake ABC transporter, ATP-binding protein TcyC |
L-cystine uptake ABC transporter, ATP-binding protein TcyC |
CRON 3. | ||||||||
ssuB |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -41 score = 6.02987 sequence = TAATTCCTATTAAAATAGTAGGGATTA Gene: SA0166: sulfonate ABC transporter, ATPase component |
|
|
|
|
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -41 score = 5.71783 sequence = CAATTCTTATTAAAACGATAAGAATAA Gene: SSP0459: sulfonate ABC transporter, ATPase component |
|
sulfonate ABC transporter, ATPase component |
ssuA |
Gene: SA0167: sulfonate ABC transporter, substrate-binding component |
|
|
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Gene: SSP0458: sulfonate ABC transporter, substrate-binding component |
|
sulfonate ABC transporter, substrate-binding component |
ssuC |
Gene: SA0168: sulfonate ABC transporter, permease component |
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Gene: SSP0457: sulfonate ABC transporter, permease component |
|
sulfonate ABC transporter, permease component |
SA0169 |
Gene: SA0169: putative acyl-CoA dehydrogenase |
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|
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Gene: SSP0456: putative acyl-CoA dehydrogenase |
|
putative acyl-CoA dehydrogenase |
CRON 4. | ||||||||
SA2080 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -62 score = 4.58556 sequence = TAAAGTCGAGTGTTAAACTAGGAATAA Gene: SA2080: putative acyl-CoA dehydrogenase |
*
Staphylococcus capitis SK14 Site: position = -57 score = 4.21229 sequence = AAAAGTCGAGTGTTAAACTAGGATTAA Gene: STACA0001_1208: putative acyl-CoA dehydrogenase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -65 score = 4.41296 sequence = TAAAGTCGAGTGTTAAACTATGAATAA Gene: SE1858: putative acyl-CoA dehydrogenase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -56 score = 4.38511 sequence = TTAATCCGAGTGATACACTAAACTTAA Gene: Sca_1777: putative acyl-CoA dehydrogenase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -266 score = 4.35193 sequence = TAATGTCGAGTGATAAACTAGGTTTAA Gene: SH0767: putative acyl-CoA dehydrogenase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -110 score = 5.12883 sequence = TAAATCTTATCGGTAAAGTAAGGATTT Gene: SSP0622: putative acyl-CoA dehydrogenase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -256 score = 4.54588 sequence = TATTTCCTAGATAATAAATAATGTATT Gene: MCCL_0131: putative acyl-CoA dehydrogenase |
putative acyl-CoA dehydrogenase |
CRON 5. | ||||||||
SA1850 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -40 score = 5.17471 sequence = TAATACATACTAAACTTATCGGAAATG Gene: SA1850: putative transporter for thiosulphate |
|
*
Staphylococcus epidermidis ATCC 12228 Site: position = -35 score = 4.56744 sequence = AATACCTTAGTATTTATATCGGAAAAG Gene: SE1646: putative transporter for thiosulphate |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -38 score = 4.80801 sequence = TAAAACTTACTAACATTATCGGAAAAG Gene: Sca_1551: putative transporter for thiosulphate |
Gene: SH0987: putative transporter for thiosulphate |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -37 score = 5.12404 sequence = TTAATCTTATTGATTTTATCGGGAAAG Gene: SSP0834: putative transporter for thiosulphate |
*
Macrococcus caseolyticus JCSC5402 Site: position = -40 score = 5.764 sequence = TATTTCTTACTAAATCTATCGGAATTA Gene: MCCL_0379: putative transporter for thiosulphate |
putative transporter for thiosulphate |
CRON 6. | ||||||||
SA0198 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -77 score = 4.77743 sequence = TAATCTTGAGTAGATTACTATGATATA Gene: SA0198: oligopeptide transport ATP-binding protein |
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|
|
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oligopeptide transport ATP-binding protein |
CRON 7. | ||||||||
SA0165 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -59 score = 4.93951 sequence = GTAATCCGATAAGAATTATAGTAATAT Gene: SA0165: hypothetical protein |
|
|
|
|
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -69 score = 4.79243 sequence = CATATCCTTGTAATCTGATAAGATTTA Gene: SSP0460: hypothetical protein |
|
hypothetical protein |
CRON 8. | ||||||||
metN2 |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -42 score = 5.75824 sequence = TTATTCCTAGTGGATTAATAAGAATTT Gene: SA0420: methionine ABC transporter paralog, ATP-binding protein MetN2 |
*
Staphylococcus capitis SK14 Site: position = -43 score = 5.39689 sequence = ATATTCAGATAAGTATAATCAGAATTG Gene: STACA0001_1483: methionine ABC transporter paralog, ATP-binding protein MetN2 |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -42 score = 5.26907 sequence = ATATTCAGATAATTTTAATCGGAAATT Gene: SE2322: methionine ABC transporter paralog, ATP-binding protein MetN2 |
Gene: Sca_2191: methionine ABC transporter paralog, ATP-binding protein MetN2 |
|
|
Gene: MCCL_0417: methionine ABC transporter paralog, ATP-binding protein MetN2 |
methionine ABC transporter paralog, ATP-binding protein MetN2 |
metP2 |
Gene: SA0421: methionine ABC transporter paralog, permease protein MetP2 |
Gene: STACA0001_1484: methionine ABC transporter paralog, permease protein MetP2 |
Gene: SE2321: methionine ABC transporter paralog, permease protein MetP2 |
Gene: Sca_2190: methionine ABC transporter paralog, permease protein MetP2 |
|
|
Gene: MCCL_0418: methionine ABC transporter paralog, permease protein MetP2 |
methionine ABC transporter paralog, permease protein MetP2 |
metQ2 |
Gene: SA0422: methionine ABC transporter paralog, substrate-binding protein MetQ2 |
Gene: STACA0001_1485: methionine ABC transporter paralog, substrate-binding protein MetQ2 |
Gene: SE2320: methionine ABC transporter paralog, substrate-binding protein MetQ2 |
Gene: Sca_2189: methionine ABC transporter paralog, substrate-binding protein MetQ2 |
|
|
Gene: MCCL_0419: methionine ABC transporter paralog, substrate-binding protein MetQ2 |
methionine ABC transporter paralog, substrate-binding protein MetQ2 |
CRON 9. | ||||||||
mccA |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -88 score = 5.82057 sequence = TAATTCTTATCTGAAAAGTAAGAATTA Gene: SA0418: cystathionine beta-synthase |
*
Staphylococcus capitis SK14 Site: position = -96 score = 5.37115 sequence = TAATTCATACCTGATAAGTAAGAATTT Gene: STACA0001_1480: cystathionine beta-synthase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -96 score = 5.70436 sequence = TAATTCATATCTGATAAGTAAGAATTA Gene: SE2324: cystathionine beta-synthase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -92 score = 5.5993 sequence = TAATCCATATCAGTATAGTAGGAATAA Gene: Sca_0086: cystathionine beta-synthase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -109 score = 5.42572 sequence = TAATTCATAGTGATTGAGTAAGAATTA Gene: SH2549: cystathionine beta-synthase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -57 score = 5.03317 sequence = TAATTCTTATCGGTATAGTAAGGTATT Site: position = -144 score = 5.06379 sequence = GTATGCTTACTGAAAAAGTAGGAATTA Gene: SSP0252: cystathionine beta-synthase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -46 score = 5.58334 sequence = TAATCCCGAGTTATCTGATAAGAATAA Gene: MCCL_1789: cystathionine beta-synthase |
cystathionine beta-synthase |
mccB |
Gene: SA0419: cystathionine gamma-lyase |
Gene: STACA0001_1481: cystathionine gamma-lyase |
Gene: SE2323: cystathionine gamma-lyase |
Gene: Sca_0087: cystathionine gamma-lyase |
Gene: SH2548: cystathionine gamma-lyase |
Gene: SSP0253: cystathionine gamma-lyase |
Gene: MCCL_1790: cystathionine gamma-lyase |
cystathionine gamma-lyase |
luxS |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -244 score = 4.75591 sequence = GAATTATTACTTATTCTATCGGTTTTA Gene: SA1936: S-ribosylhomocysteinase |
*
Staphylococcus capitis SK14 Site: position = -193 score = 5.49013 sequence = TAATTATTACTTATTCTATCGGAATAA Gene: STACA0001_0838: S-ribosylhomocysteinase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -182 score = 5.57936 sequence = TAATTATTACTTATTTTATCGGATTTA Gene: SE1732: S-ribosylhomocysteinase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -110 score = 4.67294 sequence = TTATCCCGAGTAAACTTATCAACTTAA Gene: Sca_1637: S-ribosylhomocysteinase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -182 score = 5.57936 sequence = TAATTATTACTTATTTTATCGGATTTA Gene: SH0901: S-ribosylhomocysteinase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -159 score = 5.13983 sequence = TAATTATTACTTATTCTATCGGGTTTA Gene: SSP0751: S-ribosylhomocysteinase |
Gene: MCCL_1791: S-ribosylhomocysteinase |
S-ribosylhomocysteinase |
CRON 10. | ||||||||
cysK |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -55 score = 5.08397 sequence = TATATCCGATAAATAAACTAAGATTTC Gene: SA0471: cysteine synthase |
*
Staphylococcus capitis SK14 Site: position = -57 score = 4.89394 sequence = TATATCCGATAGGAAAACTAAGTTTTA Gene: STACA0001_2088: cysteine synthase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -58 score = 4.8227 sequence = TATATCCGATAGAAAAACTAAGTATTG Gene: SE2270: cysteine synthase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -143 score = 4.44308 sequence = GATATCCGATGAAATAGCTAAGATATA Gene: Sca_0164: cysteine synthase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -56 score = 4.94506 sequence = TATATCCGATAGAAAAACTAAGTTTTA Gene: SH2497: cysteine synthase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -55 score = 5.1095 sequence = TATATCCGATTGAAAAAGTAGGTTTTA Gene: SSP2243: cysteine synthase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -50 score = 5.36043 sequence = TAAATCCGATAAGCGTAATAAGAATAA Gene: MCCL_1900: cysteine synthase |
cysteine synthase |
CRON 11. | ||||||||
cysJ |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -257 score = 4.71125 sequence = TAATAAATAGTAAATAAATAAAAAATA Gene: SA2413: sulfite reductase [NADPH] flavoprotein, alpha-component |
*
Staphylococcus capitis SK14 Site: position = -246 score = 4.71748 sequence = TAAAGCATAGTATTCCGATAAGATATA Gene: STACA0001_1811: sulfite reductase [NADPH] flavoprotein, alpha-component |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -273 score = 4.71837 sequence = CAAAACATAGTATTCCGATAAGAAATA Gene: SE2180: sulfite reductase [NADPH] flavoprotein, alpha-component |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -52 score = 5.94771 sequence = TAATTCCTACTAAAAAACTAAGAATAA Site: position = -134 score = 5.42667 sequence = TAATTCTTAGTAAACCTATTGGAATTA Gene: Sca_0059: sulfite reductase [NADPH] flavoprotein, alpha-component |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -152 score = 4.51928 sequence = TAAAACATAGTATTCTGATATGTTTTG Gene: SH0414: sulfite reductase [NADPH] flavoprotein, alpha-component |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -152 score = 4.52675 sequence = AATAACCTAGTATTCGTATCGGAAATA Site: position = -58 score = 4.58672 sequence = TTAAACCTATTTAGACAATAATTATAA Gene: SSP2408: sulfite reductase [NADPH] flavoprotein, alpha-component |
|
sulfite reductase [NADPH] flavoprotein, alpha-component |
cysI |
|
Gene: STACA0001_1810: sulfite reductase (NADPH) hemoprotein, beta-component |
Gene: SE2179: sulfite reductase (NADPH) hemoprotein, beta-component |
Gene: Sca_0060: sulfite reductase (NADPH) hemoprotein, beta-component |
Gene: SH0415: sulfite reductase (NADPH) hemoprotein, beta-component |
Gene: SSP2407: sulfite reductase (NADPH) hemoprotein, beta-component |
|
sulfite reductase (NADPH) hemoprotein, beta-component |
cysG |
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Gene: STACA0001_1809: uroporphyrin-III C-methyltransferase |
Gene: SE2178: uroporphyrin-III C-methyltransferase |
Gene: Sca_0061: uroporphyrin-III C-methyltransferase |
Gene: SH0416: uroporphyrin-III C-methyltransferase |
Gene: SSP2406: uroporphyrin-III C-methyltransferase |
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uroporphyrin-III C-methyltransferase |
SSP2405 |
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Gene: SSP2405: sirohydrochlorin ferrochelatase |
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sirohydrochlorin ferrochelatase |
sirC |
Gene: SA2412: Precorrin-2 dehydrogenase |
Gene: STACA0001_1808: Precorrin-2 dehydrogenase |
Gene: SE2177: Precorrin-2 dehydrogenase |
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Gene: SH0417: Precorrin-2 dehydrogenase |
Gene: SSP2404: Precorrin-2 dehydrogenase |
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Precorrin-2 dehydrogenase |
ytnM |
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Gene: STACA0001_1807: conserved membrane protein YtnM |
Gene: SE2176: conserved membrane protein YtnM |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -105 score = 5.35107 sequence = TAAATCCTTGTAAACCAATAAGAATAA Gene: Sca_0062: conserved membrane protein YtnM |
Gene: SH0418: conserved membrane protein YtnM |
Gene: SSP2403: conserved membrane protein YtnM |
|
conserved membrane protein YtnM |
cysD |
|
Gene: STACA0001_1806: sulfate adenylyltransferase |
Gene: SE2175: sulfate adenylyltransferase |
Gene: Sca_0063: sulfate adenylyltransferase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -48 score = 4.87171 sequence = TAAAACCGAGTAAACTAATCTAATTAA Gene: SH0419: sulfate adenylyltransferase |
Gene: SSP2402: sulfate adenylyltransferase |
|
sulfate adenylyltransferase |
cysC |
|
Gene: STACA0001_1805: adenylylsulfate kinase |
Gene: SE2174: adenylylsulfate kinase |
Gene: Sca_0064: adenylylsulfate kinase |
Gene: SH0420: adenylylsulfate kinase |
Gene: SSP2401: adenylylsulfate kinase |
|
adenylylsulfate kinase |
cysH |
|
*
Staphylococcus capitis SK14 Site: position = -71 score = 5.50752 sequence = TTATTCTGACAATTCAGATAGGAATTT Gene: STACA0001_1812: phosphoadenosine phosphosulfate reductase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -68 score = 4.98385 sequence = TTATTCTGACAATTCTGATATGTTTTG Gene: SE2181: phosphoadenosine phosphosulfate reductase |
Gene: Sca_0058: phosphoadenosine phosphosulfate reductase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -68 score = 5.56749 sequence = TTATTCTGACAATTCTGATAGGTATTA Gene: SH0413: phosphoadenosine phosphosulfate reductase |
Gene: SSP2409: phosphoadenosine phosphosulfate reductase |
|
phosphoadenosine phosphosulfate reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |