Regulons of Lactobacillus acidophilus NCFM
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BfrR |
|
Fructooligosaccharides utilization |
1 |
1 |
| TF |
CcpA |
HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
Carbon catabolism |
45 |
45 |
| TF |
CggR |
Fructose-1,6-bisphosphate |
Glycolysis |
1 |
1 |
| TF |
CopR |
Copper ion, (Cu2+) |
Copper homeostasis |
1 |
1 |
| TF |
FlpA |
Oxygen |
Heavy metal resistance |
3 |
2 |
| TF |
FruR |
Fructose-6-phosphate |
Fructose utilization |
1 |
2 |
| TF |
HrcA |
Heat shock |
Heat shock response |
6 |
8 |
| TF |
LBA0573 |
|
Multidrug resistance |
1 |
2 |
| TF |
LBA1472 |
|
Sugar utilization |
2 |
2 |
| TF |
LBA1638 |
|
Transport |
1 |
1 |
| TF |
LJ1265 |
|
Pentose utilization |
4 |
2 |
| TF |
LacR |
Lactose |
Lactose utilization |
2 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
9 |
4 |
| TF |
MdxR |
Maltose |
Maltose utilization; Maltodextrin utilization |
2 |
2 |
| TF |
MleR |
L-malate |
Malate utilization |
2 |
1 |
| TF |
MurR |
N-acetylmuramate-6-phosphate |
N-acetylmuramate utilization |
1 |
1 |
| TF |
NagR |
N-acetylglucosamine-6-phosphate |
N-acetylglucosamine utilization |
9 |
10 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
5 |
6 |
| TF |
PurR |
5-phosphoribosyl 1-pyrophosphate |
Purine metabolism |
8 |
7 |
| TF |
Rex |
NADH |
Energy metabolism |
5 |
3 |
| TF |
RpiR |
|
Sugar utilization |
3 |
2 |
| TF |
ScrR |
Sucrose-6-phosphate |
Sucrose utilization |
2 |
4 |
| TF |
TreR |
Trehalose-6-phosphate |
Trehalose utilization |
2 |
4 |
| TF |
YhcF |
|
Multidrug resistance; Multidrug efflux |
2 |
2 |
| TF |
YxeR |
|
Antibiotic resistance |
1 |
1 |
| TF |
YybA |
|
unknown |
1 |
1 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
| RNA |
L10_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L13_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L19_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L20_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L21_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
Lysine |
Lysine |
Lysine biosynthesis |
4 |
2 |
| RNA |
Purine |
Adenine; Guanine |
Purine metabolism |
3 |
2 |
| RNA |
PyrR |
PyrR |
Pyrimidine metabolism |
7 |
4 |
| RNA |
SMK_box_riboswitch |
S-adenosylmethionine |
Methionine metabolism |
1 |
1 |
| RNA |
T-box(Ala) |
Ala-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Arg) |
Arg-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Asn) |
Asn-tRNA |
Amino acid metabolism |
3 |
2 |
| RNA |
T-box(Asp) |
Asp-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Gly) |
Gly-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Ile) |
Ile-tRNA |
Amino acid metabolism |
5 |
4 |
| RNA |
T-box(Leu) |
Leu-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Met) |
Met-tRNA |
Amino acid metabolism |
8 |
4 |
| RNA |
T-box(Phe) |
Phe-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Ser) |
Ser-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Thr) |
Thr-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Tyr) |
Tyr-tRNA |
Amino acid metabolism |
2 |
2 |
| RNA |
T-box(Val) |
Val-tRNA |
Amino acid metabolism |
2 |
2 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
2 |
1 |
| RNA |
ykoK |
Magnesium ion, (Mg2+) |
Magnesium homeostasis |
1 |
1 |
| RNA |
yybP-ykoY |
|
|
2 |
2 |
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Regulated Genes
|
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