Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Lactobacillus acidophilus NCFM

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BfrR Fructooligosaccharides utilization 1 1
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 45 45
TF CggR Fructose-1,6-bisphosphate Glycolysis 1 1
TF CopR Copper ion, (Cu2+) Copper homeostasis 1 1
TF FlpA Oxygen Heavy metal resistance 3 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF HrcA Heat shock Heat shock response 6 8
TF LBA0573 Multidrug resistance 1 2
TF LBA1472 Sugar utilization 2 2
TF LBA1638 Transport 1 1
TF LJ1265 Pentose utilization 4 2
TF LacR Lactose Lactose utilization 2 1
TF LexA DNA damage SOS response 9 4
TF MdxR Maltose Maltose utilization; Maltodextrin utilization 2 2
TF MleR L-malate Malate utilization 2 1
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 9 10
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 5 6
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 8 7
TF Rex NADH Energy metabolism 5 3
TF RpiR Sugar utilization 3 2
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 4
TF TreR Trehalose-6-phosphate Trehalose utilization 2 4
TF YhcF Multidrug resistance; Multidrug efflux 2 2
TF YxeR Antibiotic resistance 1 1
TF YybA unknown 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 4 2
RNA Purine Adenine; Guanine Purine metabolism 3 2
RNA PyrR PyrR Pyrimidine metabolism 7 4
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 3 2
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 5 4
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 8 4
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 2
RNA T-box(Val) Val-tRNA Amino acid metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 2 2
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