Regulon of NrdR in Lactobacillus acidophilus NCFM
| Regulator type: | Transcription factor |
| TF locus tag: | LBA1546 |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Regulog: | NrdR - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Lactobacillaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -83
Score: 5.1 Sequence: GTACAAGATATTGTGG
Position: -52
Score: 3.5 Sequence: ATCATACATAATGTGT
Locus tag: LBA0041
Name: nrdJ Funciton: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Locus tag: LBA0040
Name: cbrX Funciton: Additional lipoprotein component of predicted cobalamin ECF transporter
Locus tag: LBA0039
Name: cbrT Funciton: Substrate-specific component CbrT of predicted cobalamin ECF transporter
Locus tag: LBA0038
Name: pduO Funciton: Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) |
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nrdJ
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Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
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cbrX
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Additional lipoprotein component of predicted cobalamin ECF transporter
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cbrT
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Substrate-specific component CbrT of predicted cobalamin ECF transporter
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pduO
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Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17)
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Position: -53
Score: 4 Sequence: CTACCAGATATTGACT
Position: -23
Score: 4.7 Sequence: ACCCTATATATGGTAG
Locus tag: LBA1949
Name: dgk1 Funciton: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
Locus tag: LBA1950
Name: dgk2 Funciton: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) |
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dgk1
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Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
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dgk2
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Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
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Position: -53
Score: 5.5 Sequence: GCACAATATATAGTAT
Locus tag: LBA1653
Name: pnuN Funciton: NrdR-regulated deoxyribonucleotide transporter, PnuC-like |
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pnuN
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NrdR-regulated deoxyribonucleotide transporter, PnuC-like
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Position: -58
Score: 4.5 Sequence: ATACAAGATGTTGTGC
Locus tag: LBA0160
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: LBA0161
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |