# TF - CcpA: LBA0431
>LBA1872(agl) Score=5 Pos=-49 [Lactobacillus acidophilus NCFM]
TTGAAAACGGTTTCTT
>LBA0752(pgi) Score=4.3 Pos=-90 [Lactobacillus acidophilus NCFM]
GTGAATGCGCTTATAA
>LBA0225(bglA) Score=4.6 Pos=-54 [Lactobacillus acidophilus NCFM]
TTGCAACCGATTTCAT
>LBA0885(bglB) Score=4.8 Pos=-35 [Lactobacillus acidophilus NCFM]
ATGAAAGCGATTACAG
>LBA1459(galK) Score=4.3 Pos=-36 [Lactobacillus acidophilus NCFM]
CTGAAAACGATTACAG
>LBA0587(rbsK) Score=4.1 Pos=-61 [Lactobacillus acidophilus NCFM]
TTGGATGCGTTTTTTT
>LBA1433(dhaK) Score=4.7 Pos=-35 [Lactobacillus acidophilus NCFM]
TTGTAAGCGATTGCAT
>LBA1812(agl3) Score=4.8 Pos=-40 [Lactobacillus acidophilus NCFM]
TTGAAAGCGAATACAT
>LBA0452(manL) Score=4.5 Pos=-42 [Lactobacillus acidophilus NCFM]
ATAAAAGCGGATTCAT
>LBA1779(fruR) Score=4.2 Pos=-37 [Lactobacillus acidophilus NCFM]
GAGAAAGCGAATACAA
>LBA1401(hcaD) Score=4.4 Pos=-52 [Lactobacillus acidophilus NCFM]
ATGAAAGAGGTTACAA
>LBA0680(glgB) Score=4.3 Pos=-55 [Lactobacillus acidophilus NCFM]
AAGTAAGCGCTTTCCG
>LBA0271(ldh) Score=3.8 Pos=-205 [Lactobacillus acidophilus NCFM]
ATGAAACCAGTATTAT
>LBA0724(licT) Score=4.8 Pos=-163 [Lactobacillus acidophilus NCFM]
TTGACACCGCTTTCAA
>LBA0724(licT) Score=4.3 Pos=-196 [Lactobacillus acidophilus NCFM]
TTTAAAACATTTTCAT
>LBA1653(pnuC) Score=4.7 Pos=-190 [Lactobacillus acidophilus NCFM]
ATAAAAGCGTTTTAAA
>LBA0745(pmi) Score=4.3 Pos=-58 [Lactobacillus acidophilus NCFM]
AAGAAAAGGGTTTCAT
>LBA0874(bglA) Score=4.9 Pos=-44 [Lactobacillus acidophilus NCFM]
ATGCAAACGTTTTCAA
>LBA1443(rafR) Score=5 Pos=-206 [Lactobacillus acidophilus NCFM]
TTTTAAGCGCTTTCAT
>LBA1708(licT) Score=5.1 Pos=-131 [Lactobacillus acidophilus NCFM]
ATGAAAGCGTTATCAT
>LBA1689(simA) Score=4.5 Pos=-100 [Lactobacillus acidophilus NCFM]
GTGAAAGCGAATACAT
>LBA0956(pfk) Score=4.2 Pos=-134 [Lactobacillus acidophilus NCFM]
ATGTAAGTGCTAACAT
>LBA1479(glcT) Score=4.7 Pos=-138 [Lactobacillus acidophilus NCFM]
TTGCAATCGCTTACAT
>LBA0461(adhE) Score=4.3 Pos=-161 [Lactobacillus acidophilus NCFM]
AAGCAAGCGCTTCCAT
>LBA1632(gabD) Score=4.7 Pos=-66 [Lactobacillus acidophilus NCFM]
TTGTAAACGCTTTATA
>LBA0639(ptsH) Score=4.4 Pos=-111 [Lactobacillus acidophilus NCFM]
ATGTAAACTGTTACAT
>LBA0400(scrB) Score=4.6 Pos=-31 [Lactobacillus acidophilus NCFM]
AAGATAACGCTTACAT
>LBA0400(scrB) Score=4.5 Pos=-188 [Lactobacillus acidophilus NCFM]
ATGATAACGTATTCAA
>LBA0400(scrB) Score=4.9 Pos=-220 [Lactobacillus acidophilus NCFM]
ATGTAAACGCTTTTAT
>LBA0430(pepQ) Score=4.6 Pos=-85 [Lactobacillus acidophilus NCFM]
TTGCAAACGTTTACAG
>LBA1485(rbsK) Score=4.7 Pos=-101 [Lactobacillus acidophilus NCFM]
TTGAAAGCGATTACAC
>LBA0431(ccpA) Score=4.4 Pos=-75 [Lactobacillus acidophilus NCFM]
CTGTAAACGTTTGCAA
>LBA1013(treR) Score=4.5 Pos=-102 [Lactobacillus acidophilus NCFM]
TTGAAAGCGATCACAA
>LBA1013(treR) Score=4.7 Pos=-169 [Lactobacillus acidophilus NCFM]
TATAAAGCGTTTTCAT
>LBA1012(treP) Score=4.8 Pos=-29 [Lactobacillus acidophilus NCFM]
ATGAAAACGCTTTATA
>LBA1012(treP) Score=4.3 Pos=-96 [Lactobacillus acidophilus NCFM]
TTGTGATCGCTTTCAA
>LBA1467(lacL) Score=5 Pos=-47 [Lactobacillus acidophilus NCFM]
ATAAAAGCGTTTTCAA
>LBA0401(scrA) Score=4.9 Pos=-30 [Lactobacillus acidophilus NCFM]
ATAAAAGCGTTTACAT
>LBA0401(scrA) Score=4.7 Pos=-219 [Lactobacillus acidophilus NCFM]
ATGTAAGCGTTATCTT
>LBA1873(ackB) Score=4.4 Pos=-72 [Lactobacillus acidophilus NCFM]
ATGAAAGCGCTATACT
>LBA1442(msmE) Score=5.1 Pos=-53 [Lactobacillus acidophilus NCFM]
ATGAAAGCGCTTAAAA
>LBA1974(spxB) Score=4.4 Pos=-110 [Lactobacillus acidophilus NCFM]
GAAAAAGCGGTTTCAT
>LBA1974(spxB) Score=4 Pos=-78 [Lactobacillus acidophilus NCFM]
AAGATAGCGTTTTGAA
>LBA1870(mapA) Score=4.4 Pos=-74 [Lactobacillus acidophilus NCFM]
TGTAAACCGCTTTCAA
>LBA1870(mapA) Score=4.6 Pos=-48 [Lactobacillus acidophilus NCFM]
ATGAAAGCGTAAACAA
# RNA - L10_leader
>LBA0369(rplJ) Score=70.2 Pos=-163 [Lactobacillus acidophilus NCFM]
GTTAATTGTAAATTCTACCTAAGACTCGGGTGGCATGACGCCTCAAAATCCCGCCGAGGCCAGAAGATAATGAAGATTTTTATGCTCCATGTCTTTCGGCATGGAGTTTTTGCTTTAAAAGGCC
# RNA - TPP
>LBA0576(ykoE) Score=63 Pos=-140 [Lactobacillus acidophilus NCFM]
TAAGTCACTAGGGGTGCTGAAAAGCTGAGATATACCCTTCGAACTTGAACAAGGTAATGCTTGCGATAAGGAAAGTGCTAATTATAGATCTT
# RNA - FMN
>LBA0965(ribU) Score=86.7 Pos=-192 [Lactobacillus acidophilus NCFM]
GTTGTCTTCAGGGCAGGGTGAAAATCCCGACCGGCGGTTAGAGTCCGCGACCCACGTAAGTGGTTGAATCGTTAGATACCGATGGTTATAGTCTAGATGGAAGAAGACAGACTA
# RNA - PyrR
>LBA1383(pyrR) Score=63.5 Pos=-133 [Lactobacillus acidophilus NCFM]
AATGTCCTTTAAAATTAGTCCCGTGAGGCTAGCAAGGCAGGCTTAAATAAAAGTTTTGACTTTACTGAAAGCTCCTAGTCTCAAAGTAGACTGGGAGCTTTTTTCAT
>LBA1382(pyrB) Score=40.1 Pos=-123 [Lactobacillus acidophilus NCFM]
CCCAACCATTTAATTGACTCCAGAGAGGGCCAGAAAGGTTGCTTAGTTTTTCGTATACCAAAATACGGAAAAAGGCCTGGAGTAATTAAATGCTTCAGGCTTTTTTGTT
>LBA0563(pyrR) Score=63 Pos=-147 [Lactobacillus acidophilus NCFM]
GATGACCTTTAAAATTAGTCCCGTGAGGCTAAGAAGGAAATCTGCGTGTGCTAGTCTTTTTTGTGCTAGCAGAAACAGAAAGACCATCTTGGACTCAGTGTCCTTGGTGGTCTTTTTCTT
>LBA1386(pyrF) Score=23.1 Pos=-118 [Lactobacillus acidophilus NCFM]
CAAACTTTAAACGGTACAGAGAGACCGCAAGTTCACAATATTGGCTTAAATTTAGATAGTGAAAGTCTATACTTAGTGTCTCTCTGCGCTTGGTATAGACTTTTTTTGTGG
# RNA - L13_leader
>LBA0323(rplM) Score=46.6 Pos=-69 [Lactobacillus acidophilus NCFM]
GTATGTTTGTCCACGATAGGCCCCGGAAACTTATTGTTTTCAAACTGCAAATA
# RNA - L19_leader
>LBA1286(rplS) Score=31.5 Pos=-59 [Lactobacillus acidophilus NCFM]
ATGGGTATTCCGCTGACGCTGGTACGTTGATGAATGCCGA
# RNA - L20_leader
>LBA1538(infC) Score=74.7 Pos=-220 [Lactobacillus acidophilus NCFM]
TGAGAACAAGAAGAAGCACCCGCTTCTCGCCTAAGTTAAGTAAACCTCTAGGCTGATCGATAATTTCTGTTGATTAAAGGCGGGGTGATACTTATCCCGCCTTTTTCTTGTCCT
# RNA - L21_leader
>LBA1338(rplU) Score=61.2 Pos=-95 [Lactobacillus acidophilus NCFM]
TCCACATCTGCAACCGCACGGCTAGGGTTAGAAGACTTCTTGAGTAAGAAGCACCCCAGTTCGGCGAGTCTAAGTATTTTT
# RNA - Lysine
>LBA0112(lysX) Score=74.9 Pos=-285 [Lactobacillus acidophilus NCFM]
CCAATGCAATAGAGGTTGCGACAATCACAAGGTATTTTGGAGTCCGCGAAGATGAAGAAGAATATCTCAGGGTTGCCGCCGAAATGGATTCAATATTCGCGTATTAATCTGTTGGGCTACAGGAGCATATCCTGCAGACTGTCTCGGTTAGTCCCCGAGGAGCGCTATAAGATTT
>LBA0851(lysA) Score=112 Pos=-260 [Lactobacillus acidophilus NCFM]
TAAATCATAGAGGCGCAACTGACAAGAGTAACAATTATAAGTTAGGCAAAACGATGATTAATTGTGAAAGGGGAGGTTGCCGAAGCTTAACCACGCCAAAGGTATAGGCTGGGTCGCAGTTGAATAAATTGCGAACTGTCGCGAAAATTTCGCGGAGCGCTATCGAATATAA
# RNA - Purine
>LBA1959(pbuO) Score=57.8 Pos=-174 [Lactobacillus acidophilus NCFM]
TACTTAACAATCAAGTTATCTATATATCGTCGAAATAAGGTCGACAGTATCTACCCTGAGCCATAAATTCAGGACTATAGGTATCAGACGTCATAATTT
>LBA0240(xpt) Score=63.3 Pos=-174 [Lactobacillus acidophilus NCFM]
AGATTAAGCCAATACAAATATCTATATATCGTCGAAATAAGGTCGACAGTTTCTACCCACTACCGTAAATGGTGGACTATAGGTAAACGAAATTAAGAA
# TF - Rex: LBA0398
>LBA0461(adhE) Score=5.5 Pos=-45 [Lactobacillus acidophilus NCFM]
TTGTAAATTAGTTCACAA
>LBA0271(ldh) Score=5.4 Pos=-40 [Lactobacillus acidophilus NCFM]
TTGTTAAAATTATCACTA
>LBA0463(ackA) Score=5.4 Pos=-41 [Lactobacillus acidophilus NCFM]
TTGTGAAATATATAACTA
# RNA - ykoK
>LBA0212(mgtB) Score=123.8 Pos=-245 [Lactobacillus acidophilus NCFM]
ATAAAAACTGTTAGGTGAGACTCCTACGTGAACACACGCTATCGCCCAGAAACATCCAGAGATGCCAACGGGTTAAATAGGTGTCGTCGACTTAAGGCGAGATCCAGATAGCTAGCATGTGCTTACGTCACGTAGTGTTAAAACTGAACGACGAGTATAACGGAA
# RNA - yybP-ykoY
>LBA0523(atcL) Score=48.2 Pos=-144 [Lactobacillus acidophilus NCFM]
AACTTGTCATAAGGGAGTAACGGCAATTGCTTGCGATAAATCCAACAGCCGAAGCAAAGATACTTCTGGATTTATCTTAATTTGTGAGACTTATGTGCTACAAGC
>LBA1389(atcL) Score=42.7 Pos=-166 [Lactobacillus acidophilus NCFM]
AATATACATATAGGGAGTAACCGACAAATATACTTTGTATTTATGGCGTCATATCACGAAAGCAATTTCCGCTATAAATTTAAATGGTGAGACTATGCATAAACTATC
# RNA - T-box(Ala)
>LBA0417(alaS) Score=55.3 Pos=-213 [Lactobacillus acidophilus NCFM]
TTCAGCTTAAGATATGTTTTTTGATTTATTATTTCAAAGAGAGAGCCGAAGGATGAGAAGGCTTAATAATGGTCAAAGAATGCTCCTTTAAGTTTAATAATTAAGAATATTAAGAGGTAACAAACACTGTTGCAATCAAGGTGGTACCGCGCGCGGAGCGTCCTTGAAAA
# RNA - T-box(Asn)
>LBA0578(glnQ) Score=113.4 Pos=-478 [Lactobacillus acidophilus NCFM]
AAAAAGCGATGAAAAAGACGAGTAAATGATTCAATCTTTTAGTGAGTTGGCGACAGTGGAAATCCGACAGACCCTGAATCATTGAAAAACACTTTTAGCAGCTCACCGAAATAATAATTCTTAAAGTAGGTTGAGACGTCTCCGGTACGTTACCACGCCGGTGGAGCATGACTGTGCTTCATGAGGAGGTCTATTACTAGACAATTTGGGTGGTACCGCGGAAAACTTTCGTCCCTTGATT
>LBA1896(asnA) Score=116.8 Pos=-310 [Lactobacillus acidophilus NCFM]
AAAAAGCTATGAAAAAGACGAGTAAATAATCTAATTCTTTTCAGTGAATTAGTGCTAGTGTGAAACTAATAGACCCTGGATTATTGAAAAACACTTTTAGCAGCTCACCGAAATAATAATTCTTAAAGTAGGTTGAGACGTCTCCGGTACGTTACCACACCGGTGGAGCATGATGGTGCTCCATAAGAGGTCTATTATTAGACAAGTTGGGTGGTACCGCGGAAAAAAGCCTTTCGTCCCTATTTT
# RNA - T-box(Asp)
>LBA0935(hisS) Score=37.8 Pos=-236 [Lactobacillus acidophilus NCFM]
AATTATCGATGACGAAGAATGAAGATTAGCAAGATCTATTTGAAGAGACTGTCAGGTTGGTGAGATGGCAGATAGATCGCGGTCTGTGACACCTTTAGCAGATAATGGTTCGTTTGGCGAGCGTTAATCGCAGCAACCAAAAAGGTGGTACCGTGCTAATGTAAGCGCCCTTGAATT
# RNA - T-box(Arg)
>LBA1600(argS) Score=58.7 Pos=-216 [Lactobacillus acidophilus NCFM]
CTAGTAAGTTAAAAGTAGTAGTTATTTTTTGTTTTTAGCGAGTCTATGTTGATGGAAGATAGATATCAGGAAATAATGAAGGCGTGTTTAACTAATTAAAATAATGAGATTTAATAAGCGGATACTTTGTATCAATTTGAGTGGTACCGCGGGTTAGTAACTCGTCTCTTTC
# RNA - T-box(Gly)
>LBA1199(glyQ) Score=65.7 Pos=-210 [Lactobacillus acidophilus NCFM]
GTATTTGACAATAATGAGGATTAGAAAAGTACTAGTTCAGCGAATGTCGTTTGGTGAGAGGACATCTAGGAAAAGGCCCCTCTAGTCATACTCAATTAAGTGCAGGAAGAAGACTTCCTGAATTAGGGTGGAACCGCGAGATATTTCGTCCCTATG
# RNA - T-box(Ile)
>LBA1216(oppA) Score=98.4 Pos=-499 [Lactobacillus acidophilus NCFM]
AAGAACAGCTTTGATGAGGAAAGTAAGTCTAATCAGAATTTTCAGAGAGTTCCGGGTTGGTGAAAAGGAATAATTCTGATTTTGCCGAAAATCACCTTTGAGCGGGAGTTGCGATAACAGTAATTTCAGGGTCCGCCCTATATAGCGGCAACGTATCGCTCTTTTTAGAGCCGCACGTAAAAGGCTAGTTTTTTTAATTAGCAAAAAATAGGTGGTACCGCGTTAAACGCCCTATTA
>LBA1036(brnQ) Score=99.9 Pos=-313 [Lactobacillus acidophilus NCFM]
TGAAAACAAAAAGAAAGAAGAGTAGTTCATTCTTACTTTTCAGCGAATCCCGTTAGGTGTGAGGGGATAAAGTTAAGTTTAAGCGAAAATCACTTTCTAGTTCTGTTTCTCAACTATTGAGTAAGAAACAGTGGGAGCGCCCATTATAGTGCCAACGTATCGCCGATTAAGTCGGCCGCACGTGAAAGGTATTATTAGCAATAATAATATGAATAAAGGGTGGTACCACGCTAATGACGTCCCTCAGCC
>LBA1347(oppA) Score=92.8 Pos=-318 [Lactobacillus acidophilus NCFM]
TAATTTAGCTTTGATAAGGAAAGTAACTTAAGATTAAGTTTTCAGAGAGTCTTTGGTGTGGTGGAAAAAAGATAATGAGATCTTATGCAAAAATCACCTTTGAGCTGAAGAGACGATATTTAGTCTTTTCAGGGCCCGCCCTATACAGCGGCGACGTATCGCTTGTCTATATGATGAGCCGCACGTGCATGAGATCAGTATCAATTGCTGATGAATAAATAGGTGGTACCGCGTCAAAACGCCCTATTA
>LBA0817(ileS) Score=62.3 Pos=-228 [Lactobacillus acidophilus NCFM]
AAATAATAATTAGATTGACAGTAAAACTTAGTGGCGATTCAGCGAGTTAGAGATGGTGTGAGACTAACATAAGTGCCCAAAAGTTGATCGGCTGCCATATTGATCTAAGCGTTTTTTGCACGTTACGCAAAAGTAAGTGGAATTCTTTTTAGAATTCAATTTAGGTGGTACCACGATTAACCTCGTCCTAATTTG
# TF - PurR: LBA0218
>LBA1952(pbuO) Score=5.6 Pos=-30 [Lactobacillus acidophilus NCFM]
AAACACGAACAAT
>LBA1956(pbuO) Score=4.4 Pos=29 [Lactobacillus acidophilus NCFM]
AAAGGAGAACAAT
>LBA0218(purR) Score=4.8 Pos=-27 [Lactobacillus acidophilus NCFM]
AAAACCAAACATT
>LBA1559(purC) Score=5.3 Pos=-151 [Lactobacillus acidophilus NCFM]
AAACACGAACGAT
>LBA1892(purA) Score=4.9 Pos=-123 [Lactobacillus acidophilus NCFM]
AAAATCGAACTAT
>LBA1562(fhs) Score=4.4 Pos=-59 [Lactobacillus acidophilus NCFM]
ATATAAGAACAAT
>LBA1893(guaC) Score=4.4 Pos=-120 [Lactobacillus acidophilus NCFM]
AAAACCGAATTAT
# RNA - T-box(Leu)
>LBA1617(leuS) Score=88.2 Pos=-228 [Lactobacillus acidophilus NCFM]
AATAAAGGTCAGGAAGTATTAGTAAGGATATTTTTTCAGAGAGAGGCTGGTTGCTGCGAAGTCTTAGAATAGAATTGCGAACTCGTCCTGGAACTAGAACCTATCGTTGCCATCCGCGTTAAGGAGCAAATTAAGTGTCACATTTTTGTGAAACTTAGGTGGTACCGCGATTATTTCGTCCTATGA
# RNA - T-box(Met)
>LBA0904(metQ) Score=91.6 Pos=-287 [Lactobacillus acidophilus NCFM]
TAAACATCTTGAAGAGCTGAGTAGCGAGAATTTTATTTTTAAAGAGAGCTAACGTTGTGGTGAAAGTTAGCAAATAAAACCTGGTGAATATGGGCTTGGAACGATGACTGATGGTGACATTTAGCTATCAGCGGAGTTGTATCCGTTAACAATGCAGGCTATTATTTGATAGCTAATGAGGTTTATTACGTAAGTGATAAATGAATTAAAGGTGGTAACGCGAGCATTCGTCCTTTTGGA
>LBA1080(metE2) Score=75.5 Pos=-308 [Lactobacillus acidophilus NCFM]
AAGCGACGAAGAAAAGATAAGTAGTTAGCGTGTACCGTCAAAGAGAGCTGCGAATGGTGAAATGCAGTACGGGAGGACCTGATGAAAATGGTCTTGGAGTCCATTGGATTGCAAGCAGTAGTAAGTAATTCACGGGGGATGCCCGATATAGCATACGAGTATAATTTCTTAATTAGAAACGTACTTAGTAAGGATATTAATGTGAATTAATATCGAATATGGGTGGTAACACGCTGAAGCGTCCCTAGGCT
>LBA1395(metQ) Score=92 Pos=-270 [Lactobacillus acidophilus NCFM]
AAAAAATCTTGATGAACAGAGTAACTAAAAATACTTTTTTCAGAGAATTGCTGGTTGGTGTGAAGCAAGAAAAAGCTTTTAGTGAAAATGGGTTCAAAATGATTGTACTGGTGATATTTAGCCAATAACGGGGTTGCGCTCGTTAACAACGCAAACTATTGTTAGATAGTTCAAAGGTTATTTGCGTGAGCAGATAATGAATAAAGGTGGTAACACGAAGCACTCGTCCTTTTTTG
>LBA1961(oppA) Score=76.9 Pos=-309 [Lactobacillus acidophilus NCFM]
ATTAAGCAATGACAAGAAAAGTAATTGATAATATCGTCCACAGAGAGTTTCCATATTGGTGGAAGGAAATGACTATATATTATCTTTGAAAATGGCCTTCGAGCATGAACCTGCGATATTTAGCAGATTCAGGGTCCGCCCTCTATCGCGGTAGTGTATCGTCTTTTTGACCGTACATGAACCAAGGTGGAACTTCCATGAAGAATAGGTGGTACCGCGTGATAAACGCCCTATTAGA
# RNA - T-box(Phe)
>LBA1519(pheS) Score=95.6 Pos=-246 [Lactobacillus acidophilus NCFM]
ATTAATTACTAAGATCAAGACTAGTAACGGTTAATTTCTAGACAGAGAATCTTCTTTAAAAAGCTGAAAGAGAAGATAGAATGATAATCGTGAATTTCATCTTGGGAGTAGAATCTAATCAATTCCGGTATTTCACCGTTATCGAAAACTTGAGTGTGGGCATATTTATGTTCAAACTAGGGTGGTACCGCGACGCTTCGTCCCTATT
# RNA - T-box(Ser)
>LBA1626(serS) Score=77.6 Pos=-253 [Lactobacillus acidophilus NCFM]
AAAATAGACGCAAACACAAAATCCTAAGACTGCTTCAGAGAGTTCACGGTTGGTGCGAGTGAATGCATAGTCGTTTCCAGATTTTATTTAAAGTGGGCAATTAATAGTTGCACGGTTTGGCGTCGTTACTCGTCTATTAAAGAGGTGCAGTCTAATTTAGACTGAAAATGGGTGGTACCGCGAAACTGTGTAAGAGCCGATTCGTCCCAGTA
# RNA - T-box(Thr)
>LBA1543(thrS) Score=36.9 Pos=-240 [Lactobacillus acidophilus NCFM]
ATTGAAATTAATTAAGCGAACATGATGTTTTTCAACTCAGAGAGAGGGGCCTAGTTCTGGAAGCTTCTCATTAGAAAAACACCCCAATCGTTTATCCCAAAATTGAAAAGAGATAGGTTGGATACCTTTATTAATCCATGTTAAGAGGTTAGATAAACGCTAACCTGAATTTTGGGTGGAACCACGCAATTAACGTCCCAGTG
# RNA - T-box(Tyr)
>LBA0192(tyrS) Score=58.2 Pos=-222 [Lactobacillus acidophilus NCFM]
TCATTATTAACACAAGTAGTAAATCGATTCAGTGTTCAGAGAACTAGCGGTTAGGTGTGAGCTAGGCAGGTCGATTTTGACGAAATACTGATAGGGTAGTTTCTTTATCAACTATTTTGAGATGCCAAATAGGCATGAACGTGGGTGGTACCACGGCTAAAGAAGATAATTAGTCGTCCCTTGAGA
>LBA0538(tyrT) Score=68.5 Pos=-237 [Lactobacillus acidophilus NCFM]
CAACAATTAACGAAACAGTAGCTGCTTCGCTCAGCGTTCAGAGAACTGGTGGTAGGTGCAAACCAGACAGGCGGAGTTAGACGAATTACTTCGTAATTATTATTGCTCGGAAATGTTCAGATCCGTTACCATCTGATAGAGATTCAAGCTATGATGCTTGAAATAGTGGGTGGTACCACGGCAATCGTCGTCCCGTTG
# RNA - T-box(Val)
>LBA0794(valS) Score=86.4 Pos=-246 [Lactobacillus acidophilus NCFM]
ACAAAGCCATAATCAAGAGGAATCGACTTTATTTACAGAGAAAAGCCATTGAAGCTGAGAGGCCAGAAGTTGATTTGTAGCTTGATTGCTGATTAACTGAACATAAGTAGGTTAATCCGGACACTTCAGCGCCGTTATCGCTTATTGAGAGAAGCATATTTTATATGCTTAAACCATAGGTGGTACCGCGGTTAGTAAATCGTCCTAGACAA
>LBA1222(brnQ) Score=102.1 Pos=-300 [Lactobacillus acidophilus NCFM]
TACACACTATGAATAGAAGAGTAGATTGTCTTCGATTTATTCAGCGAGCCTGAGATAGTGAAAGCAGGTATAAATTAAGACAATTGAAAGTAATCTATGAGTGACTAAGGCGACCACAAGAAGTTTTAGTCGGGAGTGCCCGTTACTGCACCAACGTATCTGATTTTTTCATGTACGCGTAAGGCATTATTAGCAATAATAATGTAAAAAAAGGTGGTAACACGCAAAAAGGCGTCCTTTAAGC
# TF - CopR: LBA1963
>LBA1963(copR) Score=6.1 Pos=-32 [Lactobacillus acidophilus NCFM]
ATAGTTACATTTGTAAACGA
# TF - ScrR: LBA0399
>LBA0400(scrB) Score=6.2 Pos=-80 [Lactobacillus acidophilus NCFM]
TATGATAAACGTTTGACACA
>LBA0401(scrA) Score=6.1 Pos=-174 [Lactobacillus acidophilus NCFM]
TGTGTCAAACGTTTATCATA
>LBA0401(scrA) Score=6.5 Pos=-86 [Lactobacillus acidophilus NCFM]
TGTGTCAAACGATTGACATA
>LBA0400(scrB) Score=6.4 Pos=-168 [Lactobacillus acidophilus NCFM]
TATGTCAATCGTTTGACACA
# TF - MurR: LBA1702
>LBA1705(murP) Score=6.2 Pos=-39 [Lactobacillus acidophilus NCFM]
ATGAAATATTGTTACTT
# TF - CggR: LBA0697
>LBA0697(cggR) Score=8 Pos=1 [Lactobacillus acidophilus NCFM]
TGGATTCGGACTTTTCTTTGCTCGAAGCGCTCGTTCC
# TF - TreR: LBA1013
>LBA1013(treR) Score=5.2 Pos=-56 [Lactobacillus acidophilus NCFM]
TTACTTGTCTATACATTTAT
>LBA1013(treR) Score=6.6 Pos=-134 [Lactobacillus acidophilus NCFM]
AAACTTGTATATACAAGTTG
>LBA1012(treP) Score=6.5 Pos=-68 [Lactobacillus acidophilus NCFM]
CAACTTGTATATACAAGTTT
>LBA1012(treP) Score=5.4 Pos=-146 [Lactobacillus acidophilus NCFM]
ATAAATGTATAGACAAGTAA
# TF - YybA: LBA1663
>LBA1663(yybA) Score=7.8 Pos=-51 [Lactobacillus acidophilus NCFM]
TTTTTGTTGCAAATGCAACAAAAA
# TF - HrcA: LBA1249
>LBA0405(groS) Score=7.6 Pos=-159 [Lactobacillus acidophilus NCFM]
TTAGCACTTTTTTATAAAGAGTGCTAA
>LBA0205(hsp) Score=7.1 Pos=-126 [Lactobacillus acidophilus NCFM]
TTAGCACTAAATATTAAAGAGTGCTAA
>LBA0638(clpL) Score=6.8 Pos=-70 [Lactobacillus acidophilus NCFM]
TTAGCACTTGACTACCAAGAGTGCTAA
>LBA0694(clpP) Score=6.1 Pos=-59 [Lactobacillus acidophilus NCFM]
TTAGCACAGTACTTGTATGAGTGCTAA
>LBA0405(groS) Score=6.8 Pos=-84 [Lactobacillus acidophilus NCFM]
TTAGCACTTAACTAAAAGGAGTGCTAA
>LBA1910(clpC) Score=6.9 Pos=-57 [Lactobacillus acidophilus NCFM]
TTAGCACTCAACGCACTAGAGTGCTAA
>LBA1249(hrcA) Score=6.1 Pos=-93 [Lactobacillus acidophilus NCFM]
TTAGCACTCAGGTTGCATTATTGCTAA
>LBA1249(hrcA) Score=6.1 Pos=-45 [Lactobacillus acidophilus NCFM]
TTAGCACCTGATAGATGTGAGTGCTAA
# TF - NrdR: LBA1546
>LBA0041(nrdJ) Score=3.5 Pos=-52 [Lactobacillus acidophilus NCFM]
ATCATACATAATGTGT
>LBA1653(pnuN) Score=5.5 Pos=-53 [Lactobacillus acidophilus NCFM]
GCACAATATATAGTAT
>LBA0160(nrdD) Score=4.5 Pos=-58 [Lactobacillus acidophilus NCFM]
ATACAAGATGTTGTGC
>LBA1949(dgk1) Score=4 Pos=-53 [Lactobacillus acidophilus NCFM]
CTACCAGATATTGACT
>LBA1949(dgk1) Score=4.7 Pos=-23 [Lactobacillus acidophilus NCFM]
ACCCTATATATGGTAG
>LBA0041(nrdJ) Score=5.1 Pos=-83 [Lactobacillus acidophilus NCFM]
GTACAAGATATTGTGG
# TF - BfrR: LBA0500
>LBA0502(bfrE) Score=6.4 Pos=-28 [Lactobacillus acidophilus NCFM]
AAATTGAAACGTTTCAAAAG
# TF - LacR: LBA1465
>LBA1465(lacR) Score=4.7 Pos=-65 [Lactobacillus acidophilus NCFM]
GGAATTGAGTAAATATT
# TF - MdxR: LBA1874
>LBA1872(malL) Score=5.4 Pos=-78 [Lactobacillus acidophilus NCFM]
TTTTGATACCGCTAACATCT
>LBA1870(malK) Score=5.7 Pos=-104 [Lactobacillus acidophilus NCFM]
TTCTGATACCGGTAACATGG
# TF - LJ1265: LBA1488
>LBA1488(LJ1265) Score=6.4 Pos=-103 [Lactobacillus acidophilus NCFM]
ACTTGTAATTGCTTACAAAA
>LBA1489(LJ1266) Score=6.4 Pos=-46 [Lactobacillus acidophilus NCFM]
TTTTGTAAGCAATTACAAGT
# TF - LBA1472: LBA1472
>LBA1472(LBA1472) Score=6.9 Pos=-118 [Lactobacillus acidophilus NCFM]
ATGTAACCGGTTACAT
>LBA1471(LBA1471) Score=6.9 Pos=-74 [Lactobacillus acidophilus NCFM]
ATGTAACCGGTTACAT
# TF - FruR: LBA1779
>LBA1779(fruR) Score=4.5 Pos=-52 [Lactobacillus acidophilus NCFM]
TGGTTGATTTTGATGGAGAA
>LBA1779(fruR) Score=4.5 Pos=-62 [Lactobacillus acidophilus NCFM]
TGAAGAAAAATGGTTGATTT
# TF - LexA: LBA1280
>LBA0666(recA) Score=4.2 Pos=-82 [Lactobacillus acidophilus NCFM]
TTGAACATTAGTTTGT
>LBA0688(uvrB) Score=4.6 Pos=-87 [Lactobacillus acidophilus NCFM]
GCGAAAACACGTTCGT
>LBA1166(addB) Score=4.1 Pos=-8 [Lactobacillus acidophilus NCFM]
GCGAACAAATGATCAA
>LBA1280(lexA) Score=4.1 Pos=-80 [Lactobacillus acidophilus NCFM]
AAGAACGCCTGTTTGA
# TF - RpiR: LBA1172
>LBA1174(rpiA) Score=5.9 Pos=-196 [Lactobacillus acidophilus NCFM]
TGAAATTAATTTTCA
>LBA1172(rpiR) Score=5.9 Pos=-107 [Lactobacillus acidophilus NCFM]
TGAAAATTAATTTCA
# TF - MleR: LBA1074
>LBA1075(mleS) Score=4.7 Pos=-363 [Lactobacillus acidophilus NCFM]
TATTAATTTCATTTAAA
# TF - FlpA: LBA1969, LBA0544
>LBA0542(copZ) Score=6 Pos=-81 [Lactobacillus acidophilus NCFM]
AAATTGACGATCATCAAGTT
>LBA0541(cadA) Score=5.4 Pos=-75 [Lactobacillus acidophilus NCFM]
ATCTTGATAACAGTCAAGTC
# TF - LBA0573: LBA0573
>LBA0573(LBA0573) Score=5.1 Pos=-34 [Lactobacillus acidophilus NCFM]
TAGTACATAAGGAGACTA
>LBA0573(LBA0573) Score=5.5 Pos=-62 [Lactobacillus acidophilus NCFM]
TGGTCCCTGTATGTACTA
# TF - YxeR: LBA1840
>LBA1840(yxeR) Score=3.6 Pos=-81 [Lactobacillus acidophilus NCFM]
TTATTGACAACTCGTCACAAT
# TF - LBA1638: LBA1638
>LBA1638(LBA1638) Score=6.2 Pos=-66 [Lactobacillus acidophilus NCFM]
TGTAGATTGTATTCTTCA
# RNA - SMK_box_riboswitch
>LBA1622(metK) Score=61.7 Pos=-89 [Lactobacillus acidophilus NCFM]
TTATCGGTTCAAGTCCTGAAAGGATTCATTAAATAATTAGTGAAGATGCCTTGTAACCGAATAGCCGATGTCTATATAGGGGGACTAATATG
# TF - YhcF: LBA1189
>LBA1680(ytsC) Score=6.3 Pos=-59 [Lactobacillus acidophilus NCFM]
AGTGTATTAATTAAATAATACAGT
>LBA1189(yhcF) Score=6.6 Pos=-43 [Lactobacillus acidophilus NCFM]
ACTGTAATAGATAAATAATACAGT
# TF - NagR: LBA0516
>LBA0516(nagR) Score=4.4 Pos=-66 [Lactobacillus acidophilus NCFM]
AATGAAATCTAGACCAATTT
>LBA0462(glmS) Score=4.4 Pos=-52 [Lactobacillus acidophilus NCFM]
AAAATAAACTAGTCCATTAA
>LBA0462(glmS) Score=4.6 Pos=-28 [Lactobacillus acidophilus NCFM]
ATATTGAACTAGACCAAAGG
>LBA1948(nagB) Score=5.6 Pos=-57 [Lactobacillus acidophilus NCFM]
AAAATGGTCTATTCCATTTT
>LBA1948(nagB) Score=5.4 Pos=-37 [Lactobacillus acidophilus NCFM]
ATAATGGACTAGACCATTAA
>LBA0491(celB) Score=4.9 Pos=-60 [Lactobacillus acidophilus NCFM]
ATAGAGGTATATACCGAATT
>LBA1947(PF00248) Score=5.4 Pos=-102 [Lactobacillus acidophilus NCFM]
TTAATGGTCTAGTCCATTAT
>LBA1947(PF00248) Score=5.6 Pos=-82 [Lactobacillus acidophilus NCFM]
AAAATGGAATAGACCATTTT
>LBA0143(LBA0143) Score=5.2 Pos=-95 [Lactobacillus acidophilus NCFM]
AAATTGGTCAATACCAGTTT
>LBA0144(nagA2) Score=5.2 Pos=-80 [Lactobacillus acidophilus NCFM]
AAACTGGTATTGACCAATTT